Conserved Protein Domain Family
ClC_1_like

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cd03683: ClC_1_like 
ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelial chloride transport.
Statistics
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PSSM-Id: 239655
Aligned: 16 rows
Threshold Bit Score: 454.782
Created: 3-May-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative Cl-putative pore
Feature 1:putative Cl- selectivity filter
Evidence:
  • Comment:Based on sequence similarity to other members of the family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
NP_000076      49 DWYFLMTLGVLMALVSCAMDLAVESVVRAHQWlyrei-------------------gdshlLRYLSWTVYPVALVSFSSG 109  human
CAB51058       50 DWYFLFALGVIMALISFTMDFTVSKMLNAHRWlqqel-------------------ggnvlLRYLSWIVYPIALVAFSTG 110  African clawe...
CAC42266       83 DWFLSALLGIITAVLSVGMDVAIEVLQHAHVTfydkml------------------aissyLAFSQWVAHIVILTMFAAI 144  nematode
CAA93879      124 DWFISAALGFITAIFSIFIDMGIEYLIHFRNFmlesle------------------qfnnyAAFCGWVFYITGLVYLAAL 185  Caenorhabditi...
AAH53277       70 EWYCYALLGIITALMSFFMDMTVAKLLNAHQWlygcl-------------------kghhlLQFLCWTLYPACLCALSTS 130  zebrafish
XP_629352      68 IWLFLAAVGLLGSIYLVAVDLIFKYVVFSWREafmsl-------------------tenyfLQYLSFIAWTVALATGSCF 128  Dictyostelium...
XP_637702     163 TLLFIPTLGILIALMGILCDFLLMELGTLRDFvtsrhnshviptdgttptpnssiadkydlVEGIVFVGYSVFFALISVC 242  Dictyostelium...
XP_656092      80 VAFYLFLLGVVSAVIGVSMDITVEKLQDLRLWlcslv--------------------ensfYKVIIWVIYTIVLVTMAFL 139  Entamoeba his...
NP_001024886  141 DWMFLALLGVAVAFISILVDMMVFSFQEIQRKtvsiyniyg-----------sdqsyllwgCGLLGWCGYMIGLVAASAC 209  nematode
XP_974499      76 EWVFLAILGILVALISYMIDWGVRMCNWSRMWlygpla-----------------hnghpwAKYFAWIALPVTLCMFSAG 138  red flour beetle
Feature 1                   #####                                       #####                     
NP_000076     110 FSqsITPSSGGSGIPEVKTMLAGVvlEDYLDIKNFGAKVVGLSCTLACGstlfLGKVGPFVHLSVMMAAYLGRVRTTtig 189  human
CAB51058      111 FAqsITPHSGGSGIPELKTILSGVilEEYLTIKNFGAKVVGLTCTLSAGstmfLGKVGPFVHLSSMIAAYLGRMRTSvag 190  African clawe...
CAC42266      145 FCqiVSKQAVGSGIPEVKVIMHGFkmENYLTTRTLVAKMVGLTLAMGGGl--pIGKEGPFVHMGAIVATLLSKITSAcqy 222  nematode
CAA93879      186 VCygFGKQAVGSGIPEVKVIIHGFqlKNYLSGKTLIAKMIGLTLTIGSGl--pVGKEGPFVHIGAIVASLLNKVTAAcqy 263  Caenorhabditi...
AAH53277      131 FAhsVCPYSAGSGVPEARAILLGVdmPDYLSLSNLFAKMFGLICTLAAGstvfLGKVGPFVHLSIMVGAFMNRLHVScrg 210  zebrafish
XP_629352     129 IIkkICPAAVGSGIPDLKSIFSGFwnPFVVAPMVLLWKTIGLLLSYGSGl--sIGKEGPYIHISATLANTLLSIKPFksi 206  Dictyostelium...
XP_637702     243 CIsfISPYAVGSGIPEMKSIMSGInlSRVLGFKTLVSKIVGMVCASAAGl--tIGRTGPFMHASAIISQMLMNLKVFgai 320  Dictyostelium...
XP_656092     140 WTkfISPTANGSGVPEMKVTLLGNriPNLLTFKTLIAKVIGLVFVLGGGm--wAGKEGPFIHISSCIASQLTRLPIFrfl 217  Entamoeba his...
NP_001024886  210 FVhyVAPQAIGSGIPEMKTIIRGVilVDYLTLKTLVSKIFGVAMALGSGv--pIGKMGPFVHIASVVANQMCLLAAKfds 287  nematode
XP_974499     139 FVklVGPKAVGSGIPEMKTLLRGVpiPDFLSFHTLIAKVVGITSTLGSTm--pLGKEGPLMHISCCCAHLIGKITTFqgi 216  red flour beetle
Feature 1                                                                                         
NP_000076     190 --epeNKSKQNEMLVAAAAVGVATVFGAPFSGVLFSIEVMSSHFSVWDYWRGFFAATCGAFMFRLlavfnseqetit--s 265  human
CAB51058      191 --dyeNKSKEHEMLVAAAAVGVSTVFGAPISGVLFSVEVMSSHFAIRNYWRGFFAATCGAFVFRLlavfnseqetit--a 266  African clawe...
CAC42266      223 saffsNEGREMEMLSSGCAVGIACTFSAPIGAVLYAIESTSKYFAVKNYWRGFLAATCSAIVFRCanffvtaeqsgti-t 301  nematode
CAA93879      264 naffsNEGRAMEMLSIGCAVGIACTFSAPMGAVLYGIESTSKYFAVKNYWRSFFATTCSAMLFRFaiaffvpqhiagtit 343  Caenorhabditi...
AAH53277      211 ---gkQRAAKGEMLVVASAVGVASCFGAPISGVLFSIEVMGTHYSVSDYCPCFFAAACGAITFRLlsvcigdqdtiq--a 285  zebrafish
XP_629352     207 ---aqNDTQRSQLLAACCALGVAATFGSPIGGVLFSIEATGTFYLISNYWRAFFTATVGAVGIKIllsnpsndlle---- 279  Dictyostelium...
XP_637702     321 ---kkNQIVRYQMLICALTSGVVANFGAPIGGLLFAIEVTATTAVMGNLWKGFLCATTTAIIFFLsrstfskgnfh---- 393  Dictyostelium...
XP_656092     218 ---rnSNELFMQMLSTATSCGVSSNFGTAIGGLLFSVEVTATYFSVRNYWFGTFSSVIAAFTFRAifntyshspsly--s 292  Entamoeba his...
NP_001024886  288 --ayrEESRRMECLAAACAVGVACTFSSPVGGVLFSIEVTTMYFSVRSYWRGFFAACCGATTIRLlrayvvetevtv--s 363  nematode
XP_974499     217 ---yrNESRKLEMLAAATAVGVGCTFGAPIAGVLLSVEITTAYYGVRNYWRGFCAAVWGATFYRLlyvwiegmesvt--v 291  red flour beetle
Feature 1                                                                                         
NP_000076     266 lyktsfrvdvpFDLPEIFFFVVLGGLCGILGSAYLFCQRIFFGFIRnnrfsskllatsKPVYSALATLVLASITYPpsag 345  human
CAB51058      267 vfktsfkisfpFDLPEMFFFAILGVVCGLIGCAYLFCQRWLLGYVRrnsltskllasdKPMYSALVALLISSITFPeslg 346  African clawe...
CAC42266      302 afyqtrfptdcFLVEELPIFLLLGFISGLMGSFFIFIHRQISIFRSknrvyklifrnnFLAFTVFMAFVVGVLTFPnglg 381  nematode
CAA93879      344 ayyqtyfpnevFVVEELPFFIGLGVMTGLLGALFVYYHRRIAFFKRknrifqalfgksPILFTACCAAIFAVLVYPnglg 423  Caenorhabditi...
AAH53277      286 lfktsfstdlpFQPFEIIIFALLGLFCSILSCIYLLCHRWALRFVKtnkpistflateKSLYSAIVAFLLACFTFYhsag 365  zebrafish
XP_629352     280 -sfrthfadlnLASAQLIAFIILGVLCGLLASLFISLYTKIYNWKKhnael--fkkitPFGEVIIVAAATAILSFPlkfl 356  Dictyostelium...
XP_637702     394 svyefefvpkeYGVADLITFVGIGIITGLIGAFFVFIYEKLVRFRLrypi----lkqsRIILVLVVSLFSAIITYSagpl 469  Dictyostelium...
XP_656092     293 gllsidysfpsLQIKDSLISILLGVICGLFAVLFVMSVSTIFKTRQylrky--klgriPYLYLVIVALFTGVVTAPwyge 370  Entamoeba his...
NP_001024886  364 afyqtsfrpdaFSVDELPLFALLGLLCGILGAGYISLYRCVVLFLRnnqyakmvfqrhWIVYPIVISCIFSVVSYPhglg 443  nematode
XP_974499     292 vfktsffvdtpWAAQELLAFSILGIICGFGAAFYMRMRIKFGRFVKgsklvarikkanHFVYPGFISLVVASINFPpgig 371  red flour beetle
Feature 1                                                                                        #
NP_000076     346 rflasrlsmkqhldslfdnhswalm-tqnssppwpeeldpqhlwwewyhprftiFGTLAFFLVMKFWMLILATTiPMPAG 424  human
CAB51058      347 qflasrltmkelltslfdnrtwwislsqnssldrsplvdpnnlwlewanpqftiFGTLAFFIIMKFWMFILATTlPMPAG 426  African clawe...
CAC42266      382 ryfagrltfretmadffnnctw------vsndsrrcpdtilthwtggsegdvsiFTSLVLYYILYFVLVAICISiNVPAG 455  nematode
CAA93879      424 syvagkytfretlvdflsnctlw-----kqtngsegcpphmlehwsgpegdmmpINSLLIYFLFYFIIVPICITlYIPSG 498  Caenorhabditi...
AAH53277      366 hfiaseltmrqlltsmldgtswy----sisqnisalpepqntfwqawnppgksyFQTLTFFIITKVGLLVVACTlPLPAG 441  zebrafish
XP_629352     357 rldhatavhtmftatpds--------------dnsevlselavwtdsmpfnhgiILACFLYVVVKLVLTAVSITlPIPYG 422  Dictyostelium...
XP_637702     470 crvslptamkqflg----------------------qnepkpflfeqdqtpyykYLNLLVFIVVKLILTAFNIVlPIPGG 527  Dictyostelium...
XP_656092     371 lspfgyptyttls-------------------------qmytnssvkplfgkhyLFALFLLFIARFTITAMSISmPVPVG 425  Entamoeba his...
NP_001024886  444 mfstgrikfgtnlrdffancs--------fivtssddlvcgaeiyshwlnrgniLLLLFLFVLVHFIFSIISFTlPVPSG 515  nematode
XP_974499     372 qfmaghlgyavqvkhmfanfs---------wmapnltvaqqdivnqwktpwtgpYLHLVCLIAFNFVCNILSATmPIPNG 442  red flour beetle
Feature 1         ####                                                                            
NP_000076     425 YFMPIFVYGAAIGRLFGETlsfifpegivaggitnpimPGGYALAGAAAFSGAVTHTISTALLAFEVTGQIVHALPVLMA 504  human
CAB51058      427 YFMPVFVFGAAIGRLVGETvallypegiaadgivnpiiPGGYAWQGAPAYSGAVTHSVSTALLAFEATGQIAHILPVILC 506  African clawe...
CAC42266      456 VFVPSFIIGAAGGRLMGETmvvlfpegm-rgpggppihPGLYAVVGAAAYTGAVTHTLSVSVIICELTGQLSPILPVLIA 534  nematode
CAA93879      499 IFVPCFVIGACGGRIFGEIismiwpygl-rglgqpqiyPGLYAVVGAASFTGSVTHSLSIALIVCETTGQLCALLPVLIA 577  Caenorhabditi...
AAH53277      442 YFMPVFVYGAAVGRFIGEGsfyllsggi--ssgkslinPGGYALAGAAAFSGAVTHTLSPALLAVEMTGQCSYAVPALVA 519  zebrafish
XP_629352     423 IYIPLFAIGSAVGRFVGELmlvlfp-------nskeiyPTGYAVVGAAALCGGATRTVSSAMIILELTNDLTYMVPVLLG 495  Dictyostelium...
XP_637702     528 AITPFIVTGAALGRLFGEIlkdhfd--------sqaiePAGFAAIASAGLVSGTIRNISPSIFVLELTGQLSLLVPILIC 599  Dictyostelium...
XP_656092     426 LFSTNIVVGSVLGRFIGECfsvwgi--------snnlgPSGMAIIGGACFVGSITQTFSAAVIMIELIDDISILVPMLIA 497  Entamoeba his...
NP_001024886  516 VFLPVFVLGAAIGRFYGEIiglale-------dihiihPGIYAIVGAAAFSASVTHTVSVSVMIFEITGQLHFILPVMIS 588  nematode
XP_974499     443 SFAPVFRIGAAAGRILGELmntwyptglsyygrvtkivPGGYALVGAAAFSGAVTQTMCVGVLVLEMTSQITHVIPILIA 522  red flour beetle
Feature 1                        #               
NP_000076     505 VLAANAIAQSCQPSFYDgtv-ivKKLPYLPR 534  human
CAB51058      507 VLIANAFTQKLQPSFYDgti-ivKKLPYLPR 536  African clawed frog
CAC42266      535 MLMGNAVCKFLQPSIYEsii-rvKKYPYLPD 564  nematode
CAA93879      578 LMISNAICAFLQPSIYDsii-kiNGYPYLAD 607  Caenorhabditis elegans
AAH53277      520 TLVSNAVARAKHRPSFYdgisliKRLPHLPS 550  zebrafish
XP_629352     496 VVLSCGIGNLLNHSIYDcfl-knKNLPYLPF 525  Dictyostelium discoideum AX4
XP_637702     600 SITSTAVGNFFNRPLFDtal-kiQGLPFLSN 629  Dictyostelium discoideum AX4
XP_656092     498 TVITICFSRFFTVCVYDkia-idKKLPYIPD 527  Entamoeba histolytica HM-1:IMSS
NP_001024886  589 VMLSNAVCAYLQPSFFDtii-kiKHLPFLPD 618  nematode
XP_974499     523 NLISNSIAQLCGSGLYDsai-kaKKLPYLPD 552  red flour beetle

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