5AFB,6Z2L,6Z2L,5IAZ,5H4S,2ZX2


Conserved Protein Domain Family
Gal_Rha_Lectin

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cd22823: Gal_Rha_Lectin 
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Galactose/rhamnose-binding lectin domain
Galactose/rhamnose-binding lectin domain is formed from a four-stranded antiparallel beta-sheet which packs against an alpha-helix. It was originally described as galactose-binding lectin domain since it was found in a galactose-binding sea urchin egg lectin (SUEL). SUEL was first isolated as a D-galactoside binding lectin, it was later shown that it binds to L-rhamnose preferentially. Galactose/rhamnose-binding lectin domain is also found in many rhamnose-binding lectins, such as Oncorhynchus keta L-rhamnose-binding lectins (CSLs) and Silurus asotus rhamnose-binding lectin (SAL). In addition, the superfamily includes many SUEL/CSLs/SAL homologous proteins, such as plant beta-galactosidases, mammalian latrophilins, Caenorhabditis elegans protein EVA-1 and its homolog, human protein EVA-1 homolog C (also known as C21orf63). Due to the lack of galactose/rhamnose-binding key residues, some superfamily members may not form a binding pocket for galactose/rhamnose. Therefore, they are unlikely to act as galactose/rhamnose-binding lectins.
Statistics
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PSSM-Id: 438682
Aligned: 374 rows
Threshold Bit Score: 32.0902
Created: 30-Apr-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5AFB_A         13 ELSCEs------------yPIELRCpg-tDVImIESANYGRtddkicdsdpaq-------menircylpdaYKIMSQRCN 72   human
6Z2L_A          5 DVIKFg------------eENSLKCs--qGNLyVLHCEVQClngnne------------------iihkrcNDDIEKKCN 52   Plasmodium fa...
PSC68093      590 SNTCRevvets---vvertNAELTCpdgqVITkIVEATYANttvag---------------------csldGSRNVSECV 645  Micractinium ...
XP_006813313  771 VKSCGvk----------kvGVQVSCg--eGRIvIKNVTYGRsagdmgcdegp--------vpsdeckapnaLSVVQRQCD 830  Saccoglossus ...
XP_022107990 4054 YTICGe------------nDWLLACpd-tHKVnVTDVLWGRtadwqtcpqegsf-----stgilpctsdtgQDVVESACD 4115 crown-of-thor...
PIK52862      901 AVQCQe------------nTFHANCpi-gQVLnVTSADLGRsqgwdvcpqelvf-----snsdlpcshsqsLDIMQTACN 962  Japanese sea ...
PRW33211      337 LATCDdg-----------gTCQLSCagttRVAvVHSAIWQCddkrttcgcs----------ggddccpidlSDDVKAKCL 395  Chlorella sor...
PSC74162      501 VYDCSplndgpdvnvnegqFGVAQCpaglIITnILRPQYGTgdfn----------------------stlsFVEVYRRCI 558  Micractinium ...
XP_030839714 3971 IFSCGe------------nTVSLHChd-nQKVnITGGDWGRtmdwevcpqestfsasdtpcsaldtpsqsaIDDFAEECS 4037 Strongylocent...
ELT90022       83 VGGCYg------------dTIKVTCsr-dHVInILHDYHGLskdgachssvd---------vmcsvptifhRSDVRRQCN 140  Capitella teleta
5AFB_A         73 NrTQCAVVAGPdv-------------fpDPCPgt-----yKYLEVQYEC 103  human
6Z2L_A         53 GnNKCIYFFEYelrkktqsfrnknsieiSECVes----eqNEVKTSTTC 97   Plasmodium falciparum 3D7
PSC68093      646 GsAFCFFNVTNdym------------ggDPCFga-----wKTLTLKYTC 677  Micractinium conductrix
XP_006813313  831 GkHECPVTARKnf-------------gkDGCSkk----emKFLTINYEC 862  Saccoglossus kowalevskii
XP_022107990 4116 NtTRCGGLADVsv-------------ldYPCSetg---vhLYLSATYEC 4148 crown-of-thorns starfish
PIK52862      963 GeNECKMVVNFdd-------------fgYPCSqpd---mvLYLNVSYSC 995  Japanese sea cucumber
PRW33211      396 SlATCSYPVSYsd-------------qgDSCPga-----aKILEIVYTC 426  Chlorella sorokiniana
PSC74162      559 GqTVCVVPATNdv-------------fgDPIFgv-----gKKLQFNYEC 589  Micractinium conductrix
XP_030839714 4038 NvTHCSLLADTst-------------lgYPCStsd---mhLHLNLTYTC 4070 Strongylocentrotus purpuratus
ELT90022      141 GqQTCLYTVRDr----------------NECSyngklnqtNFLHVDYEC 173  Capitella teleta
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