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Ash1_v2.2

Organism name:
Homo sapiens (human)
Isolate:
NA24385
Sex:
male
BioSample:
SAMN03283347
BioProject:
PRJNA607914
Submitter:
Johns Hopkins University
Date:
2022/06/02
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_011064465.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAAKGM02
Assembly method:
MaSuRCA v. 4.0.7
Expected final version:
no
Genome coverage:
123.0x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore; PacBio

IDs: 12917181 [UID] 33731408 [GenBank]

See Genome Information for Homo sapiens

There are 1137 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,125,438,446
Total ungapped length3,125,438,346
Gaps between scaffolds0
Number of scaffolds66
Scaffold N50150,154,455
Scaffold L509
Number of contigs67
Contig N50150,154,455
Contig L509
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)66

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_011064475.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM021568.2n/an/a0
Chromosome 2CM021569.2n/an/a0
Chromosome 3CM021570.2n/an/a0
Chromosome 4CM021571.2n/an/a0
Chromosome 5CM021572.2n/an/a0
Chromosome 6CM021573.2n/an/a0
Chromosome 7CM021574.2n/an/a0
Chromosome 8CM021575.2n/an/a0
Chromosome 9CM021576.2n/an/a0
Chromosome 10CM021577.2n/an/a0
Chromosome 11CM021578.2n/an/a0
Chromosome 12CM021579.2n/an/a0
Chromosome 13CM021580.2n/an/a0
Chromosome 14CM021581.2n/an/a0
Chromosome 15CM021582.2n/an/a0
Chromosome 16CM021583.2n/an/a0
Chromosome 17CM021584.2n/an/a0
Chromosome 18CM021585.2n/an/a0
Chromosome 19CM021586.2n/an/a0
Chromosome 20CM021587.2n/an/a0
Chromosome 21CM021588.2n/an/a0
Chromosome 22CM021589.2n/an/a0
Chromosome XCM021590.2n/an/a0
Chromosome YCM021591.2n/an/a0
unplacedn/an/an/a41

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,125,421,876653,125,421,776150,154,45510
Chromosome 1249,932,5411249,932,541249,932,54100
Chromosome 2242,681,4871242,681,487242,681,48700
Chromosome 3200,930,2721200,930,272200,930,27200
Chromosome 4193,567,2151193,567,215193,567,21500
Chromosome 5181,993,8811181,993,881181,993,88100
Chromosome 6172,048,1521172,048,152172,048,15200
Chromosome 7160,402,6841160,402,684160,402,68400
Chromosome 8146,266,7411146,266,741146,266,74100
Chromosome 9150,154,4551150,154,455150,154,45500
Chromosome 10134,598,0011134,598,001134,598,00100
Chromosome 11134,959,4731134,959,473134,959,47300
Chromosome 12133,349,1551133,349,155133,349,15500
Chromosome 13113,854,0121113,854,012113,854,01200
Chromosome 14101,252,8371101,252,837101,252,83700
Chromosome 15100,063,2291100,063,229100,063,22900
Chromosome 1696,402,991196,402,99196,402,99100
Chromosome 1783,977,505183,977,50583,977,50500
Chromosome 1880,314,204180,314,20480,314,20400
Chromosome 1961,576,862161,576,86261,576,86200
Chromosome 2066,010,062166,010,06266,010,06200
Chromosome 2144,899,981144,899,98144,899,98100
Chromosome 2251,454,416151,454,41651,454,41600
Chromosome X154,349,8151154,349,815154,349,81500
Chromosome Y62,460,029162,460,02962,460,02900
unplaced7,921,876417,921,776467,38910
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,570116,57016,57000