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Q100 hg002v1.0.1.pat

Description:
Q100 hg002v1.0.1 assembly, paternal haplotype
Organism name:
Homo sapiens (human)
Isolate:
NA24385
Sex:
male
BioSample:
SAMN03283347
BioProject:
PRJNA727430
Submitter:
UCSC Genomics Institute
Date:
2023/12/13
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_018852605.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
Verkko v. 1.1
Expected final version:
no
Genome coverage:
170x
Sequencing technology:
PacBio Sequel

IDs: 20195011 [UID] 51125728 [GenBank]

See Genome Information for Homo sapiens

There are 1137 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,947,873,327
Total ungapped length2,940,239,074
Gaps between scaffolds0
Number of scaffolds23
Scaffold N50146,786,846
Scaffold L508
Number of contigs27
Contig N50146,786,846
Contig L508
Total number of chromosomes and plasmids23
Number of component sequences (WGS or clone)23

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_018852755.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP139546.1n/an/a
Chromosome 2CP139542.1n/an/a
Chromosome 3CP139541.1n/an/a
Chromosome 4CP139540.1n/an/a
Chromosome 5CP139539.1n/an/a
Chromosome 6CP139538.1n/an/a
Chromosome 7CP139537.1n/an/a
Chromosome 8CP139536.1n/an/a
Chromosome 9CP139535.1n/an/a
Chromosome 10CP139556.1n/an/a
Chromosome 11CP139555.1n/an/a
Chromosome 12CP139554.1n/an/a
Chromosome 13CP139553.1n/an/a
Chromosome 14CP139552.1n/an/a
Chromosome 15CP139551.1n/an/a
Chromosome 16CP139550.1n/an/a
Chromosome 17CP139549.1n/an/a
Chromosome 18CP139548.1n/an/a
Chromosome 19CP139547.1n/an/a
Chromosome 20CP139545.1n/an/a
Chromosome 21CP139544.1n/an/a
Chromosome 22CP139543.1n/an/a
Chromosome YCP139534.1n/an/a

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,947,873,327232,940,239,074146,786,84640
Chromosome 1252,060,6421252,060,642252,060,64200
Chromosome 2241,873,6001241,873,600241,873,60000
Chromosome 3201,513,6701201,513,670201,513,67000
Chromosome 4192,384,3911192,384,391192,384,39100
Chromosome 5188,875,6631188,875,663188,875,66300
Chromosome 6174,411,9461174,411,946174,411,94600
Chromosome 7160,104,4981160,104,498160,104,49800
Chromosome 8146,786,8461146,786,846146,786,84600
Chromosome 9131,519,4771131,519,477131,519,47700
Chromosome 10135,711,6931135,711,693135,711,69300
Chromosome 11133,990,2341133,990,234133,990,23400
Chromosome 12133,573,6291133,573,629133,573,62900
Chromosome 13109,226,2851109,226,285109,226,28500
Chromosome 14105,800,9941104,297,857105,800,99410
Chromosome 1596,257,017193,506,46896,257,01710
Chromosome 1693,601,116193,601,11693,601,11600
Chromosome 1784,843,465184,843,46584,843,46500
Chromosome 1880,778,415180,778,41580,778,41500
Chromosome 1961,355,730161,355,73061,355,73000
Chromosome 2067,035,426167,035,42667,035,42600
Chromosome 2144,312,601142,011,91144,312,60110
Chromosome 2249,430,498148,350,62149,430,49810
Chromosome Y62,425,491162,425,49162,425,49100