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Q100 hg002v1.0.1.mat

Description:
Q100 hg002v1.0.1 assembly, maternal haplotype
Organism name:
Homo sapiens (human)
Isolate:
NA24385
Sex:
male
BioSample:
SAMN03283347
BioProject:
PRJNA727431
Submitter:
UCSC Genomics Institute
Date:
2023/12/14
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_018852615.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
Verkko v. 1.1
Expected final version:
no
Genome coverage:
170x
Sequencing technology:
PacBio Sequel

IDs: 20212301 [UID] 51158748 [GenBank]

See Genome Information for Homo sapiens

There are 1137 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,051,542,087
Total ungapped length3,028,124,318
Gaps between scaffolds0
Number of scaffolds24
Scaffold N50154,341,406
Scaffold L508
Number of contigs29
Contig N50154,341,406
Contig L508
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)24

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_018852705.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP139523.1n/an/a
Chromosome 2CP139519.1n/an/a
Chromosome 3CP139518.1n/an/a
Chromosome 4CP139517.1n/an/a
Chromosome 5CP139516.1n/an/a
Chromosome 6CP139515.1n/an/a
Chromosome 7CP139514.1n/an/a
Chromosome 8CP139513.1n/an/a
Chromosome 9CP139512.1n/an/a
Chromosome 10CP139533.1n/an/a
Chromosome 11CP139532.1n/an/a
Chromosome 12CP139531.1n/an/a
Chromosome 13CP139530.1n/an/a
Chromosome 14CP139529.1n/an/a
Chromosome 15CP139528.1n/an/a
Chromosome 16CP139527.1n/an/a
Chromosome 17CP139526.1n/an/a
Chromosome 18CP139525.1n/an/a
Chromosome 19CP139524.1n/an/a
Chromosome 20CP139522.1n/an/a
Chromosome 21CP139521.1n/an/a
Chromosome 22CP139520.1n/an/a
Chromosome XCP139511.1n/an/a

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,051,525,517233,028,107,748154,341,40650
Chromosome 1244,022,1321244,022,132244,022,13200
Chromosome 2242,114,5301242,114,530242,114,53000
Chromosome 3201,098,0491201,098,049201,098,04900
Chromosome 4191,670,0631191,670,063191,670,06300
Chromosome 5183,262,1961183,262,196183,262,19600
Chromosome 6174,742,6461174,742,646174,742,64600
Chromosome 7160,955,1311160,955,131160,955,13100
Chromosome 8146,740,7901146,740,790146,740,79000
Chromosome 9143,803,3121143,803,312143,803,31200
Chromosome 10135,912,1421135,912,142135,912,14200
Chromosome 11135,235,8291135,235,829135,235,82900
Chromosome 12133,580,5981133,580,598133,580,59800
Chromosome 13113,335,0671107,449,919113,335,06710
Chromosome 14108,656,9441103,584,811108,656,94410
Chromosome 15100,881,410197,438,646100,881,41010
Chromosome 1690,398,456190,398,45690,398,45600
Chromosome 1783,770,189183,770,18983,770,18900
Chromosome 1878,908,821178,908,82178,908,82100
Chromosome 1961,317,360161,317,36061,317,36000
Chromosome 2066,071,324166,071,32466,071,32400
Chromosome 2147,311,730143,639,76747,311,73010
Chromosome 2253,395,392148,049,63153,395,39210
Chromosome X154,341,4061154,341,406154,341,40600
MoleculeTotal
Length
Mitochondrion MT16,570