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Han1

Organism name:
Homo sapiens (human)
Isolate:
HG00621
Sex:
male
BioSample:
SAMN17861653
BioProject:
PRJNA863267
Submitter:
Johns Hopkins University
Date:
2022/08/09
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_024586135.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JANJEX01
Assembly method:
Hifiasm v. 0.16.1-r375
Expected final version:
no
Genome coverage:
66.0x
Sequencing technology:
PacBio Sequel; Oxford Nanopore PromethION

IDs: 13464321 [UID] 35130898 [GenBank]

See Genome Information for Homo sapiens

Pathogen Detection Resources

There are 1137 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,105,009,486
Total ungapped length3,105,009,386
Gaps between scaffolds0
Number of scaffolds35
Scaffold N50148,018,047
Scaffold L509
Number of contigs36
Contig N50148,018,047
Contig L509
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)35

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_024586145.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM045155.1n/an/a0
Chromosome 2CM045156.1n/an/a0
Chromosome 3CM045157.1n/an/a0
Chromosome 4CM045158.1n/an/a0
Chromosome 5CM045159.1n/an/a0
Chromosome 6CM045160.1n/an/a0
Chromosome 7CM045161.1n/an/a0
Chromosome 8CM045162.1n/an/a0
Chromosome 9CM045163.1n/an/a0
Chromosome 10CM045164.1n/an/a0
Chromosome 11CM045165.1n/an/a0
Chromosome 12CM045166.1n/an/a0
Chromosome 13CM045167.1n/an/a0
Chromosome 14CM045168.1n/an/a0
Chromosome 15CM045169.1n/an/a0
Chromosome 16CM045170.1n/an/a0
Chromosome 17CM045171.1n/an/a0
Chromosome 18CM045172.1n/an/a0
Chromosome 19CM045173.1n/an/a0
Chromosome 20CM045174.1n/an/a0
Chromosome 21CM045175.1n/an/a0
Chromosome 22CM045176.1n/an/a0
Chromosome XCM045177.1n/an/a0
Chromosome YCM045178.1n/an/a0
unplacedn/an/an/a10

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All3,104,992,915343,104,992,815148,018,04710
Chromosome 1249,525,7871249,525,787249,525,78700
Chromosome 2242,739,7471242,739,747242,739,74700
Chromosome 3200,211,7291200,211,729200,211,72900
Chromosome 4192,045,0281192,045,028192,045,02800
Chromosome 5181,667,6371181,667,637181,667,63700
Chromosome 6170,861,0691170,861,069170,861,06900
Chromosome 7160,865,7691160,865,769160,865,76900
Chromosome 8145,880,1311145,880,131145,880,13100
Chromosome 9148,018,0471148,018,047148,018,04700
Chromosome 10135,316,0431135,316,043135,316,04300
Chromosome 11135,129,2191135,129,219135,129,21900
Chromosome 12134,132,1851134,132,185134,132,18500
Chromosome 13111,903,1911111,903,191111,903,19100
Chromosome 14101,435,4821101,435,482101,435,48200
Chromosome 15101,210,7771101,210,777101,210,77700
Chromosome 1695,412,483195,412,48395,412,48300
Chromosome 1783,450,189183,450,18983,450,18900
Chromosome 1878,996,361178,996,36178,996,36100
Chromosome 1961,978,944161,978,94461,978,94400
Chromosome 2065,189,243165,189,24365,189,24300
Chromosome 2145,827,290145,827,29045,827,29000
Chromosome 2250,610,422150,610,42250,610,42200
Chromosome X154,227,1641154,227,164154,227,16400
Chromosome Y53,057,190153,057,19053,057,19000
unplaced5,301,788105,301,6883,390,13910
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,571116,57116,57100