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Source database (GenBank or RefSeq) File type

NA20509.HIFIRW.ONTUL.na.chrY

Organism name:

Homo sapiens (human)

BioSample:

SAMEA115526446

BioProject:

PRJEB58376

Submitter:

THE JACKSON LABORATORY

Date:

2024/04/28

Assembly level:

Chromosome

Genome representation:

partial

Excluded from RefSeq:

missing metadata
partial

GenBank assembly accession:

GCA_964035205.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

Assembly method:

Verkko v1.0

Genome coverage:

40x

Sequencing technology:

PacBio-Sequel II; ONT-UL:PromethION

IDs: 22458741 [UID] 57027038 [GenBank]

See Genome Information for Homo sapiens

Pathogen Detection Resources

There are 1137 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_964035205.1	n/a	n/a	NA20509.HIFIRW.ONTUL.na.chrY	Chromosome	Latest GenBank

Comment

Global statistics

Total sequence length	55,331,641
Total ungapped length	55,331,641
Gaps between scaffolds	0
Number of scaffolds	54
Scaffold N50	33,925,773
Scaffold L50	1
Number of contigs	54
Contig N50	33,925,773
Contig L50	1
Total number of chromosomes and plasmids	54
Number of component sequences (WGS or clone)	54

Molecule name	GenBank sequence		RefSeq sequence
Chromosome contig-1	OZ036518.1	n/a	n/a
Chromosome contig-2	OZ036519.1	n/a	n/a
Chromosome contig-3	OZ036520.1	n/a	n/a
Chromosome contig-4	OZ036521.1	n/a	n/a
Chromosome contig-5	OZ036522.1	n/a	n/a
Chromosome contig-6	OZ036523.1	n/a	n/a
Chromosome contig-7	OZ036524.1	n/a	n/a
Chromosome contig-8	OZ036525.1	n/a	n/a
Chromosome contig-9	OZ036526.1	n/a	n/a
Chromosome contig-10	OZ036527.1	n/a	n/a
Chromosome contig-11	OZ036528.1	n/a	n/a
Chromosome contig-12	OZ036529.1	n/a	n/a
Chromosome contig-13	OZ036530.1	n/a	n/a
Chromosome contig-14	OZ036531.1	n/a	n/a
Chromosome contig-15	OZ036532.1	n/a	n/a
Chromosome contig-16	OZ036533.1	n/a	n/a
Chromosome contig-17	OZ036534.1	n/a	n/a
Chromosome contig-18	OZ036535.1	n/a	n/a
Chromosome contig-19	OZ036536.1	n/a	n/a
Chromosome contig-20	OZ036537.1	n/a	n/a
Chromosome contig-21	OZ036538.1	n/a	n/a
Chromosome contig-22	OZ036539.1	n/a	n/a
Chromosome contig-23	OZ036540.1	n/a	n/a
Chromosome contig-24	OZ036541.1	n/a	n/a
Chromosome contig-25	OZ036542.1	n/a	n/a
Chromosome contig-26	OZ036543.1	n/a	n/a
Chromosome contig-27	OZ036544.1	n/a	n/a
Chromosome contig-28	OZ036545.1	n/a	n/a
Chromosome contig-29	OZ036546.1	n/a	n/a
Chromosome contig-30	OZ036547.1	n/a	n/a
Chromosome contig-31	OZ036548.1	n/a	n/a
Chromosome contig-32	OZ036549.1	n/a	n/a
Chromosome contig-33	OZ036550.1	n/a	n/a
Chromosome contig-34	OZ036551.1	n/a	n/a
Chromosome contig-35	OZ036552.1	n/a	n/a
Chromosome contig-36	OZ036553.1	n/a	n/a
Chromosome contig-37	OZ036554.1	n/a	n/a
Chromosome contig-38	OZ036555.1	n/a	n/a
Chromosome contig-39	OZ036556.1	n/a	n/a
Chromosome contig-40	OZ036557.1	n/a	n/a
Chromosome contig-41	OZ036558.1	n/a	n/a
Chromosome contig-42	OZ036559.1	n/a	n/a
Chromosome contig-43	OZ036560.1	n/a	n/a
Chromosome contig-44	OZ036561.1	n/a	n/a
Chromosome contig-45	OZ036562.1	n/a	n/a
Chromosome contig-46	OZ036563.1	n/a	n/a
Chromosome contig-47	OZ036564.1	n/a	n/a
Chromosome contig-48	OZ036565.1	n/a	n/a
Chromosome contig-49	OZ036566.1	n/a	n/a
Chromosome contig-50	OZ036567.1	n/a	n/a
Chromosome contig-51	OZ036568.1	n/a	n/a
Chromosome contig-52	OZ036569.1	n/a	n/a
Chromosome contig-53	OZ036570.1	n/a	n/a
Chromosome contig-54	OZ036571.1	n/a	n/a

Molecule	Total Length
All	55,331,641
Chromosome contig-1	812,734
Chromosome contig-2	961,553
Chromosome contig-3	33,925,773
Chromosome contig-4	14,604
Chromosome contig-5	634,945
Chromosome contig-6	1,555,237
Chromosome contig-7	108,437
Chromosome contig-8	15,970
Chromosome contig-9	11,203
Chromosome contig-10	768,647
Chromosome contig-11	494,619
Chromosome contig-12	95,362
Chromosome contig-13	92,954
Chromosome contig-14	3,374,612
Chromosome contig-15	440,335
Chromosome contig-16	102,577
Chromosome contig-17	100,230
Chromosome contig-18	429,003
Chromosome contig-19	251,703
Chromosome contig-20	26,901
Chromosome contig-21	23,071
Chromosome contig-22	121,208
Chromosome contig-23	140,651
Chromosome contig-24	2,657,027
Chromosome contig-25	107,715
Chromosome contig-26	107,436
Chromosome contig-27	178,986
Chromosome contig-28	183,395
Chromosome contig-29	14,138
Chromosome contig-30	64,592
Chromosome contig-31	886,485
Chromosome contig-32	892,189
Chromosome contig-33	245,659
Chromosome contig-34	249,540
Chromosome contig-35	24,000
Chromosome contig-36	20,358
Chromosome contig-37	307,706
Chromosome contig-38	51,480
Chromosome contig-39	206,438
Chromosome contig-40	11,884
Chromosome contig-41	9,462
Chromosome contig-42	59,307
Chromosome contig-43	14,159
Chromosome contig-44	37,173
Chromosome contig-45	639,586
Chromosome contig-46	68,351
Chromosome contig-47	53,925
Chromosome contig-48	753,827
Chromosome contig-49	10,523
Chromosome contig-50	943,748
Chromosome contig-51	95,377
Chromosome contig-52	100,946
Chromosome contig-53	72,654
Chromosome contig-54	1,761,246

Assembly

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Download Assembly

NA20509.HIFIRW.ONTUL.na.chrY

See Genome Information for Homo sapiens

Pathogen Detection Resources

There are 1137 assemblies for this organism

History (Show revision history)

Comment

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