43 Human Y Chromosome Assemblies (ID 979513) - BioProject

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Accession: PRJEB58376 ID: 979513

43 Human Y Chromosome Assemblies

HGSVC Dataset - 43 Male Samples

This project consists of PacBio HiFi, ONT UL, HiC, IsoSeq reads of 43 males which were used to construct and analyze de novo assemblies as part of the Human Genome Structural Variation Consortium. Bionano Genomics optical mapping dataset was produced at Bionano Genomics, San Diego, CA

Accession	PRJEB58376
Scope	Monoisolate
Publications	Hallast P et al., "Assembly of 43 human Y chromosomes reveals extensive complexity and variation.", Nature, 2023 Sep;621(7978):355-364
Submission	Registration date: 3-Jun-2023 THE JACKSON LABORATORY

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	1692
SRA Experiments	307
Publications
PubMed	1
PMC	1
Other datasets
BioSample	253
Assembly	43

Assembly details:

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Assembly level

Number of Assemblies

Chromosome

Total

43
43

Assembly	Chrs	Taxonomy
GCA_964035225.1	13	Homo sapiens
GCA_964035105.1	217	Homo sapiens
GCA_964035325.1	23	Homo sapiens
GCA_964035205.1	54	Homo sapiens
GCA_964035305.1	23	Homo sapiens
GCA_964035405.1	60	Homo sapiens
GCA_964035195.1	45	Homo sapiens
GCA_964035075.1	32	Homo sapiens
GCA_964035295.1	61	Homo sapiens
GCA_964035175.1	124	Homo sapiens
GCA_964035395.1	7	Homo sapiens
GCA_964035055.1	10	Homo sapiens
GCA_964035275.1	45	Homo sapiens
GCA_964035155.1	17	Homo sapiens
GCA_964035375.1	11	Homo sapiens
GCA_964035035.1	9	Homo sapiens
GCA_964035255.1	53	Homo sapiens
GCA_964035135.1	60	Homo sapiens
GCA_964035355.1	14	Homo sapiens
GCA_964035235.1	30	Homo sapiens
GCA_964035095.1	48	Homo sapiens
GCA_964035115.1	18	Homo sapiens
GCA_964035335.1	29	Homo sapiens
GCA_964035215.1	44	Homo sapiens
GCA_964035315.1	44	Homo sapiens
GCA_964035415.1	23	Homo sapiens
GCA_964035085.1	11	Homo sapiens
GCA_964035185.1	16	Homo sapiens
GCA_964035065.1	17	Homo sapiens
GCA_964035285.1	66	Homo sapiens
GCA_964035165.1	12	Homo sapiens
GCA_964035385.1	20	Homo sapiens
GCA_964035045.1	100	Homo sapiens
GCA_964035265.1	16	Homo sapiens
GCA_964035145.1	35	Homo sapiens
GCA_964035365.1	18	Homo sapiens
GCA_964035025.1	2	Homo sapiens
GCA_964035245.1	75	Homo sapiens
GCA_964035125.1	49	Homo sapiens
GCA_964035345.1	113	Homo sapiens
GCA_964035455.1	6	Homo sapiens
GCA_964035435.1	12	Homo sapiens
GCA_964035445.1	10	Homo sapiens

SRA Data Details

Parameter	Value
Data volume, Gbases	11,734
Data volume, Tbytes	7.33

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43 Human Y Chromosome Assemblies

HGSVC Dataset - 43 Male Samples

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