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Items: 1 to 20 of 157

1.

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortium

(Submitter supplied) We present primary results from the Sequencing Quality Control (SEQC) project, coordinated by the United States Food and Drug Administration. Examining Illumina HiSeq, Life Technologies SOLiD and Roche 454 platforms at multiple laboratory sites using reference RNA samples with built-in controls, we assess RNA sequencing (RNA-seq) performance for sequence discovery and differential expression profiling and compare it to microarray and quantitative PCR (qPCR) data using complementary metrics. more...
Organism:
Homo sapiens; synthetic construct
Type:
Expression profiling by high throughput sequencing
5 related Platforms
3396 Samples
Download data: TXT
Series
Accession:
GSE47774
ID:
200047774

PubMed Full text in PMC Similar studies SRA Run Selector

2.

SEQC Project

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens; Rattus norvegicus; synthetic construct
Type:
Expression profiling by array; Expression profiling by high throughput sequencing
15 related Platforms
4521 Samples
Download data: CEL, TXT
Series
Accession:
GSE47792
ID:
200047792

PubMed Full text in PMC Similar studies Analyze with GEO2R

3.

AB 5500 Genetic Analyzer (synthetic construct)

Organism:
synthetic construct
2 Series
154 Samples
Download data
Platform
Accession:
GPL17278
ID:
100017278

4.

SEQC_LIF_LIV_F_1_L05_GTAGCGAAGA_FC1_23301020_20120502

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 2
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159542
ID:
301159542

SRA Run Selector

5.

SEQC_LIF_LIV_F_1_L04_GTAGCGAAGA_FC1_23301020_20120502

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 2
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159541
ID:
301159541

SRA Run Selector

6.

SEQC_LIF_LIV_F_1_L03_GTAGCGAAGA_FC1_23301020_20120502

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 2
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159540
ID:
301159540

SRA Run Selector

7.

SEQC_LIF_LIV_F_1_L02_GTAGCGAAGA_FC1_23301020_20120502

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 2
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159539
ID:
301159539

SRA Run Selector

8.

SEQC_LIF_LIV_F_1_L01_GTAGCGAAGA_FC1_23301020_20120502

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 2
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159538
ID:
301159538

SRA Run Selector

9.

SEQC_LIF_LIV_E_1_L05_GAATCTAGGG_FC1_23301020_20120502

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 1
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159537
ID:
301159537

SRA Run Selector

10.

SEQC_LIF_LIV_E_1_L04_GAATCTAGGG_FC1_23301020_20120502

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 1
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159536
ID:
301159536

SRA Run Selector

11.

SEQC_LIF_LIV_E_1_L03_GAATCTAGGG_FC1_23301020_20120502

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 1
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159535
ID:
301159535

SRA Run Selector

12.

SEQC_LIF_LIV_E_1_L02_GAATCTAGGG_FC1_23301020_20120502

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 1
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159534
ID:
301159534

SRA Run Selector

13.

SEQC_LIF_LIV_E_1_L01_GAATCTAGGG_FC1_23301020_20120502

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 1
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159533
ID:
301159533

SRA Run Selector

14.

SEQC_LIF_PSU_F_2_L06_GTCAAGCTTT_FC2_23302023_20120308

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 2
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159492
ID:
301159492

SRA Run Selector

15.

SEQC_LIF_PSU_F_2_L06_GTCAAGCTTT_FC1_23302023_20120308

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 2
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159491
ID:
301159491

SRA Run Selector

16.

SEQC_LIF_PSU_F_2_L05_GTCAAGCTTT_FC2_23302023_20120308

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 2
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159490
ID:
301159490

SRA Run Selector

17.

SEQC_LIF_PSU_F_2_L05_GTCAAGCTTT_FC1_23302023_20120308

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 2
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159489
ID:
301159489

SRA Run Selector

18.

SEQC_LIF_PSU_F_2_L04_GTCAAGCTTT_FC2_23302023_20120308

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 2
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159488
ID:
301159488

SRA Run Selector

19.

SEQC_LIF_PSU_F_2_L04_GTCAAGCTTT_FC1_23302023_20120308

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 2
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159487
ID:
301159487

SRA Run Selector

20.

SEQC_LIF_PSU_F_2_L03_GTCAAGCTTT_FC2_23302023_20120308

Organism:
synthetic construct
Source name:
Ambion ERCC Spike-In Control Mix 2
Platform:
GPL17278
Series:
GSE47774 GSE47792
Download data
Sample
Accession:
GSM1159486
ID:
301159486

SRA Run Selector

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