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Items: 13

1.

Transcript and differential exon level changes in T-REx-293 cells after Tat-SF1 depletion

(Submitter supplied) In order to identify genes with different overall transcript levels or differential exon levels (alternative processing) between the groups Control and Tat-SF1KD, we studied 11 hybridizations on the HumanExon10ST array using mixed model analysis of variance. 526 genes with significant transcript level differences between the groups and 1397 genes with significant differential exon levels were found, including 99 genes with both transcript and exon level differences (p<0.01).
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL5188
11 Samples
Download data: CEL
Series
Accession:
GSE19927
ID:
200019927
2.

[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Wed Mar 11 17:51:22 2009 PDT #%chip_type=HuEx-1_0-st-v2 #%lib_set_name=HuEx-1_0-st #%lib_set_version=v2 #%genome-species=Homo sapiens #%genome-version=hg18 #%genome-version-ucsc=hg18 #%genome-version-ncbi=36 #%genome-version-create_date=2006-03 #%netaffx-annotation-date=2009-03-16 #%netaffx-annotation-netaffx-build=28 Protocol: See manufacturer's web site
Organism:
Homo sapiens
217 Series
10 Related Platforms
9950 Samples
Download data
Platform
Accession:
GPL5188
ID:
100005188
3.

Tat-SF1 shRNA B_rep2

Organism:
Homo sapiens
Source name:
Tat-SF1KD
Platform:
GPL5188
Series:
GSE19927
Download data: CEL
Sample
Accession:
GSM498112
ID:
300498112
4.

Tat-SF1 shRNA B_rep1

Organism:
Homo sapiens
Source name:
Tat-SF1KD
Platform:
GPL5188
Series:
GSE19927
Download data: CEL
Sample
Accession:
GSM498111
ID:
300498111
5.

Tat-SF1 shRNA A_rep3

Organism:
Homo sapiens
Source name:
Tat-SF1KD
Platform:
GPL5188
Series:
GSE19927
Download data: CEL
Sample
Accession:
GSM498110
ID:
300498110
6.

Tat-SF1 shRNA A_rep2

Organism:
Homo sapiens
Source name:
Tat-SF1KD
Platform:
GPL5188
Series:
GSE19927
Download data: CEL
Sample
Accession:
GSM498109
ID:
300498109
7.

Tat-SF1 shRNA A_rep1

Organism:
Homo sapiens
Source name:
Tat-SF1KD
Platform:
GPL5188
Series:
GSE19927
Download data: CEL
Sample
Accession:
GSM498108
ID:
300498108
8.

Tat-SF1 shRNA B_rep3

Organism:
Homo sapiens
Source name:
Tat-SF1KD
Platform:
GPL5188
Series:
GSE19927
Download data: CEL
Sample
Accession:
GSM498107
ID:
300498107
9.

GFP shRNA_rep3

Organism:
Homo sapiens
Source name:
Control
Platform:
GPL5188
Series:
GSE19927
Download data: CEL
Sample
Accession:
GSM498106
ID:
300498106
10.

GFP shRNA_rep2

Organism:
Homo sapiens
Source name:
Control
Platform:
GPL5188
Series:
GSE19927
Download data: CEL
Sample
Accession:
GSM498105
ID:
300498105
11.

GFP shRNA_rep1

Organism:
Homo sapiens
Source name:
Control
Platform:
GPL5188
Series:
GSE19927
Download data: CEL
Sample
Accession:
GSM498104
ID:
300498104
12.

Empty Vector_rep2

Organism:
Homo sapiens
Source name:
Control
Platform:
GPL5188
Series:
GSE19927
Download data: CEL
Sample
Accession:
GSM498103
ID:
300498103
13.

Empty Vector_rep1

Organism:
Homo sapiens
Source name:
Control
Platform:
GPL5188
Series:
GSE19927
Download data: CEL
Sample
Accession:
GSM498102
ID:
300498102
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