GSE28254[Accession] - GEO DataSets - NCBI

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Items: 19

Select item 2000282541.

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk

(Submitter supplied) Cross-talk between DNA methylation and histone modifications drives the establishment of composite epigenetic signatures and is traditionally studied using correlative rather than direct approaches. Here we present sequential ChIP-bisulfite-sequencing (ChIP- BS-seq) as an approach to quantitatively assess DNA methylation patterns associated with chromatin modifications or chromatin-associated factors directly. more...

Organism:: Homo sapiens; Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platforms:: GPL13112 GPL11002 GPL10999
15 Samples

Download data: BED, WIG

Series

Accession:: GSE28254

ID:: 200028254

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000131122.

Illumina HiSeq 2000 (Mus musculus)

Organism:: Mus musculus

8245 Series
187379 Samples

Platform

Accession:: GPL13112

ID:: 100013112

Select item 1000110023.

Illumina Genome Analyzer IIx (Mus musculus)

Organism:: Mus musculus

895 Series
7710 Samples

Platform

Accession:: GPL11002

ID:: 100011002

Select item 1000109994.

Illumina Genome Analyzer IIx (Homo sapiens)

Organism:: Homo sapiens

1097 Series
9999 Samples

Platform

Accession:: GPL10999

ID:: 100010999

Select item 3008213985.

E14_high.MethylCap

Organism:: Mus musculus

Source name:: Embryonic stem cells

Platform:: GPL11002
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM821398

ID:: 300821398

SRA Run Selector

Select item 3008213976.

E14_medium.MethylCap

Organism:: Mus musculus

Source name:: Embryonic stem cells

Platform:: GPL11002
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM821397

ID:: 300821397

SRA Run Selector

Select item 3008213967.

mES_Dnmt-TKO_H3K27m3_ChIP

Organism:: Mus musculus

Source name:: Embryonic stem cells

Platform:: GPL13112
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM821396

ID:: 300821396

SRA Run Selector

Select item 3008213958.

mES_Dnmt-TKO_H3K27m3_ChIP-BS

Organism:: Mus musculus

Source name:: Embryonic stem cells

Platform:: GPL13112
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM821395

ID:: 300821395

SRA Run Selector

Select item 3008213949.

mES_V6.5_H3K27m3_ChIP

Organism:: Mus musculus

Source name:: Embryonic stem cells

Platform:: GPL13112
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM821394

ID:: 300821394

SRA Run Selector

Select item 30082139310.

mES_V6.5_H3K27m3_ChIP-BS

Organism:: Mus musculus

Source name:: Embryonic stem cells

Platform:: GPL13112
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM821393

ID:: 300821393

SRA Run Selector

Select item 30069933311.

Organism:: Homo sapiens

Source name:: HCT116

Platform:: GPL10999
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM699333

ID:: 300699333

SRA Run Selector

Select item 30069933212.

HCT116 high MethylCap

Organism:: Homo sapiens

Source name:: HCT116

Platform:: GPL10999
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM699332

ID:: 300699332

SRA Run Selector

Select item 30069933113.

HCT116 medium MethylCap

Organism:: Homo sapiens

Source name:: HCT116

Platform:: GPL10999
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM699331

ID:: 300699331

SRA Run Selector

Select item 30069933014.

HCT116 low MethylCap

Organism:: Homo sapiens

Source name:: HCT116

Platform:: GPL10999
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM699330

ID:: 300699330

SRA Run Selector

Select item 30069932915.

HCT116 H3K4me3-ChIP

Organism:: Homo sapiens

Source name:: HCT116

Platform:: GPL10999
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM699329

ID:: 300699329

SRA Run Selector

Select item 30069932816.

HCT116 H3K27me3-ChIP

Organism:: Homo sapiens

Source name:: HCT116

Platform:: GPL10999
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM699328

ID:: 300699328

SRA Run Selector

Select item 30069932717.

HCT116 H3K27me3-ChIP-BS

Organism:: Homo sapiens

Source name:: HCT116

Platform:: GPL10999
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM699327

ID:: 300699327

SRA Run Selector

Select item 30069932618.

colon tumor high MethylCap-BS

Organism:: Homo sapiens

Source name:: tumor colon tissue

Platform:: GPL10999
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM699326

ID:: 300699326

SRA Run Selector

Select item 30069932519.

colon normal high MethylCap-BS

Organism:: Homo sapiens

Source name:: normal colon tissue

Platform:: GPL10999
Series:: GSE28254

Download data: BED, WIG

Sample

Accession:: GSM699325

ID:: 300699325

SRA Run Selector

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