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Items: 17

1.

Global DNA Hypomethylation Coupled to Repressive Chromatin Domain Formation and Gene Silencing in Breast Cancer

(Submitter supplied) While genetic mutation is a hallmark of cancer, many cancers also acquire epigenetic alterations during tumorigenesis including aberrant DNA hypermethylation of tumor suppressors as well as changes in chromatin modifications as caused by genetic mutations of the chromatin-modifying machinery. However, the extent of epigenetic alterations in cancer cells has not been fully characterized. Here, we describe the first complete methylome maps at single nucleotide resolution of a low-passage breast cancer cell line and primary human mammary epithelial cells. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
Platforms:
GPL11154 GPL10999
14 Samples
Download data: BAM
Series
Accession:
GSE29069
ID:
200029069
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

Illumina Genome Analyzer IIx (Homo sapiens)

Platform
Accession:
GPL10999
ID:
100010999
4.

HMEC-methylC-Seq

Organism:
Homo sapiens
Source name:
mammary epithelial cells
Platform:
GPL11154
Series:
GSE29069 GSE29127
Download data: BAM
Sample
Accession:
GSM721195
ID:
300721195
5.

HCC1954-methylC-Seq

Organism:
Homo sapiens
Source name:
breast cancer cells
Platform:
GPL10999
Series:
GSE29069 GSE29127
Download data: BAM
Sample
Accession:
GSM721194
ID:
300721194
6.

HCC1954: chromatin IP against H3K36me3, bisulfite treated

Organism:
Homo sapiens
Source name:
breast cancer cells
Platform:
GPL11154
Series:
GSE29069 GSE29120
Download data: BAM
Sample
Accession:
GSM721144
ID:
300721144
7.

HMEC-mRNA-Seq

Organism:
Homo sapiens
Source name:
mammary epithelial cells
Platform:
GPL10999
Series:
GSE29069 GSE29119
Download data: BAM
Sample
Accession:
GSM721141
ID:
300721141
8.

HCC1954: chromatin IP against H3K27me3, bisulfite treated

Organism:
Homo sapiens
Source name:
breast cancer cells
Platform:
GPL11154
Series:
GSE29069 GSE29120
Download data: BAM
Sample
Accession:
GSM721143
ID:
300721143
9.

HCC1954-mRNA-Seq

Organism:
Homo sapiens
Source name:
breast cancer cells
Platform:
GPL10999
Series:
GSE29069 GSE29119
Download data: BAM
Sample
Accession:
GSM721140
ID:
300721140
10.

HCC1954: chromatin IP against H3K9me3, bisulfite treated

Organism:
Homo sapiens
Source name:
breast cancer cells
Platform:
GPL11154
Series:
GSE29069 GSE29120
Download data: BAM
Sample
Accession:
GSM721142
ID:
300721142
11.

HCC1954: input DNA

Organism:
Homo sapiens
Source name:
breast cancer cells
Platform:
GPL10999
Series:
GSE29069 GSE29118
Download data: BAM
Sample
Accession:
GSM721139
ID:
300721139
12.

HCC1954: chromatin IP against H3K36me3

Organism:
Homo sapiens
Source name:
breast cancer cells
Platform:
GPL10999
Series:
GSE29069 GSE29118
Download data: BAM
Sample
Accession:
GSM721138
ID:
300721138
13.

HCC1954: chromatin IP against H3K27me3

Organism:
Homo sapiens
Source name:
breast cancer cells
Platform:
GPL10999
Series:
GSE29069 GSE29118
Download data: BAM
Sample
Accession:
GSM721137
ID:
300721137
14.

HCC1954: chromatin IP against H3K27ac

Organism:
Homo sapiens
Source name:
breast cancer cells
Platform:
GPL10999
Series:
GSE29069 GSE29118
Download data: BAM
Sample
Accession:
GSM721136
ID:
300721136
15.

HCC1954: chromatin IP against H3K9me3

Organism:
Homo sapiens
Source name:
breast cancer cells
Platform:
GPL10999
Series:
GSE29069 GSE29118
Download data: BAM
Sample
Accession:
GSM721135
ID:
300721135
16.

HCC1954: chromatin IP against H3K4me3

Organism:
Homo sapiens
Source name:
breast cancer cells
Platform:
GPL10999
Series:
GSE29069 GSE29118
Download data: BAM
Sample
Accession:
GSM721134
ID:
300721134
17.

HCC1954: chromatin IP against H3K4me1

Organism:
Homo sapiens
Source name:
breast cancer cells
Platform:
GPL10999
Series:
GSE29069 GSE29118
Download data: BAM
Sample
Accession:
GSM721133
ID:
300721133
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Supplemental Content

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