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Items: 9

Select item 2000291181.

Genome-wide location analysis in breast cancer cells (HCC1954)

(Submitter supplied) While genetic mutation is a hallmark of cancer, many cancers also acquire epigenetic alterations during tumorigenesis including aberrant DNA hypermethylation of tumor suppressors as well as changes in chromatin modifications as caused by genetic mutations of the chromatin-modifying machinery. However, the extent of epigenetic alterations in cancer cells has not been fully characterized. Here, we describe the first complete methylome maps at single nucleotide resolution of a low-passage breast cancer cell line and primary human mammary epithelial cells. more...

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL10999
7 Samples

Download data: BAM

Series

Accession:: GSE29118

ID:: 200029118

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000109992.

Illumina Genome Analyzer IIx (Homo sapiens)

Organism:: Homo sapiens

1097 Series
9999 Samples

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Accession:: GPL10999

ID:: 100010999

Select item 3007211393.

HCC1954: input DNA

Organism:: Homo sapiens

Source name:: breast cancer cells

Platform:: GPL10999
Series:: GSE29069 GSE29118

Download data: BAM

Sample

Accession:: GSM721139

ID:: 300721139

SRA Run Selector

Select item 3007211384.

HCC1954: chromatin IP against H3K36me3

Organism:: Homo sapiens

Source name:: breast cancer cells

Platform:: GPL10999
Series:: GSE29069 GSE29118

Download data: BAM

Sample

Accession:: GSM721138

ID:: 300721138

SRA Run Selector

Select item 3007211375.

HCC1954: chromatin IP against H3K27me3

Organism:: Homo sapiens

Source name:: breast cancer cells

Platform:: GPL10999
Series:: GSE29069 GSE29118

Download data: BAM

Sample

Accession:: GSM721137

ID:: 300721137

SRA Run Selector

Select item 3007211366.

HCC1954: chromatin IP against H3K27ac

Organism:: Homo sapiens

Source name:: breast cancer cells

Platform:: GPL10999
Series:: GSE29069 GSE29118

Download data: BAM

Sample

Accession:: GSM721136

ID:: 300721136

SRA Run Selector

Select item 3007211357.

HCC1954: chromatin IP against H3K9me3

Organism:: Homo sapiens

Source name:: breast cancer cells

Platform:: GPL10999
Series:: GSE29069 GSE29118

Download data: BAM

Sample

Accession:: GSM721135

ID:: 300721135

SRA Run Selector

Select item 3007211348.

HCC1954: chromatin IP against H3K4me3

Organism:: Homo sapiens

Source name:: breast cancer cells

Platform:: GPL10999
Series:: GSE29069 GSE29118

Download data: BAM

Sample

Accession:: GSM721134

ID:: 300721134

SRA Run Selector

Select item 3007211339.

HCC1954: chromatin IP against H3K4me1

Organism:: Homo sapiens

Source name:: breast cancer cells

Platform:: GPL10999
Series:: GSE29069 GSE29118

Download data: BAM

Sample

Accession:: GSM721133

ID:: 300721133

SRA Run Selector

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db=gds|term=GSE29118[Accession]|query=1|qty=2|blobid=MCID_66681a9bbb845b085b4c14ea|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?

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