GSE29714[Accession] - GEO DataSets - NCBI

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Items: 15

Select item 2000297141.

Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3' UTRs and Near Stop Codons

(Submitter supplied) Here, we use a novel technique for locating regions of N6-adenosine methylation (m6A) throughout the transcriptome and present a profile of m6A sites in the mouse brain. Our use of methylated RNA immunoprecipitation combined with RNA-seq (MeRIP-Seq) identifies thousands of RNAs which contain m6A sites. In addition, we find that regions of m6A formation are particularly enriched near stop codons, which might provide clues into the potential funciton of this highly prevalent RNA modificaiton.

Organism:: Homo sapiens; Mus musculus

Type:: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

Platforms:: GPL11002 GPL13112 GPL11154
11 Samples

Download data: BW, TXT

Series

Accession:: GSE29714

ID:: 200029714

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000131122.

Illumina HiSeq 2000 (Mus musculus)

Organism:: Mus musculus

8229 Series
187279 Samples

Platform

Accession:: GPL13112

ID:: 100013112

Select item 1000111543.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10400 Series
180082 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 1000110024.

Illumina Genome Analyzer IIx (Mus musculus)

Organism:: Mus musculus

895 Series
7710 Samples

Platform

Accession:: GPL11002

ID:: 100011002

Select item 3008542265.

C57BL/6 Brain_Sample 2_MeRIP - NEB

Organism:: Mus musculus

Source name:: whole brain

Platform:: GPL13112
Series:: GSE29714

Download data: BW

Sample

Accession:: GSM854226

ID:: 300854226

SRA Run Selector

Select item 3008542256.

C57BL/6 Brain_Sample 2_Non-IP Control

Organism:: Mus musculus

Source name:: whole brain

Platform:: GPL13112
Series:: GSE29714

Download data: BW

Sample

Accession:: GSM854225

ID:: 300854225

SRA Run Selector

Select item 3008542237.

C57BL/6 Brain_Sample 1 MeRIP - SYSY

Organism:: Mus musculus

Source name:: whole brain

Platform:: GPL13112
Series:: GSE29714

Download data: BW

Sample

Accession:: GSM854223

ID:: 300854223

SRA Run Selector

Select item 3008542288.

C57BL/6 Brain_Sample 2_MeRIP - SYSY

Organism:: Mus musculus

Source name:: whole brain

Platform:: GPL11002
Series:: GSE29714

Download data: BW

Sample

Accession:: GSM854228

ID:: 300854228

SRA Run Selector

Select item 3008542249.

C57BL/6 Brain_Sample 1 Non-IP Control

Organism:: Mus musculus

Source name:: whole brain

Platform:: GPL11002
Series:: GSE29714

Download data: BW

Sample

Accession:: GSM854224

ID:: 300854224

SRA Run Selector

Select item 30092840310.

HEK293T_Sample 3_MeRIP-NEB

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL11154
Series:: GSE29714

Download data: BW

Sample

Accession:: GSM928403

ID:: 300928403

SRA Run Selector

Select item 30092840211.

HEK293T_Sample 3_Non-IP Control

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL11154
Series:: GSE29714

Download data: BW

Sample

Accession:: GSM928402

ID:: 300928402

SRA Run Selector

Select item 30092840112.

HEK293T_Sample 2_MeRIP-SYSY

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL11154
Series:: GSE29714

Download data: BW

Sample

Accession:: GSM928401

ID:: 300928401

SRA Run Selector

Select item 30092840013.

HEK293T_Sample 2_Non-IP Control

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL11154
Series:: GSE29714

Download data: BW

Sample

Accession:: GSM928400

ID:: 300928400

SRA Run Selector

Select item 30092839914.

HEK293T_Sample 1_MeRIP-SYSY

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL11154
Series:: GSE29714

Download data: BW

Sample

Accession:: GSM928399

ID:: 300928399

SRA Run Selector

Select item 30092839815.

HEK293T_Sample 1_Non-IP Control

Organism:: Homo sapiens

Source name:: HEK293T

Platform:: GPL11154
Series:: GSE29714

Download data: BW

Sample

Accession:: GSM928398

ID:: 300928398

SRA Run Selector

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