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Items: 12

1.

Unstressed HeLa cells and ELAVL1/HuR knock down conditions: polyA RNA-Seq, small RNA-Seq, and PAR-CLIP

(Submitter supplied) Post-transcriptional gene regulation relies on hundreds of RNA binding proteins (RBPs) but the function of most RBPs is unknown. The human RBP HuR/ELAVL1 is a conserved mRNA stability regulator. We used PAR-CLIP, a method based on RNA-protein crosslinking, to identify transcriptome wide ~26,000 HuR binding sites. These sites were on average highly conserved, enriched for HuR binding motifs and mainly located in 3' untranslated regions. more...
Organism:
Homo sapiens
Type:
Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing
Platforms:
GPL11154 GPL9115
9 Samples
Download data: BED, TXT, WIG
Series
Accession:
GSE29943
ID:
200029943

PubMed Similar studies Analyze with GEO2RSRA Run Selector

2.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

3.

Illumina Genome Analyzer II (Homo sapiens)

Organism:
Homo sapiens
753 Series
6113 Samples
Download data
Platform
Accession:
GPL9115
ID:
100009115

4.

HeLa ELAV1/HuR sRNA siRNA2

Organism:
Homo sapiens
Source name:
HeLa cell culture
Platform:
GPL9115
Series:
GSE29943
Download data
Sample
Accession:
GSM755027
ID:
300755027

SRA Run Selector

5.

HeLa ELAV1/HuR sRNA siRNA1

Organism:
Homo sapiens
Source name:
HeLa cell culture
Platform:
GPL9115
Series:
GSE29943
Download data
Sample
Accession:
GSM755026
ID:
300755026

SRA Run Selector

6.

HeLa sRNA mock sRNA

Organism:
Homo sapiens
Source name:
HeLa cell culture
Platform:
GPL9115
Series:
GSE29943
Download data
Sample
Accession:
GSM755025
ID:
300755025

SRA Run Selector

7.

HeLa ELAVL1/HuR siRNA1 5d

Organism:
Homo sapiens
Source name:
HeLa ELAVL1/HuR siRNA1 5d
Platform:
GPL11154
Series:
GSE29943
Download data: WIG
Sample
Accession:
GSM741172
ID:
300741172

SRA Run Selector

8.

HeLa ELAVL1/HuR siRNA1 2d

Organism:
Homo sapiens
Source name:
HeLa ELAVL1/HuR siRNA1 2d
Platform:
GPL11154
Series:
GSE29943
Download data: WIG
Sample
Accession:
GSM741171
ID:
300741171

SRA Run Selector

9.

HeLa mock knockdown 5d

Organism:
Homo sapiens
Source name:
HeLa mock knockdown 5d
Platform:
GPL11154
Series:
GSE29943
Download data: WIG
Sample
Accession:
GSM741170
ID:
300741170

SRA Run Selector

10.

HeLa 6SG SILAC PAR-CLIP

Organism:
Homo sapiens
Source name:
HeLa 6SG SILAC PAR-CLIP
Platform:
GPL9115
Series:
GSE29943
Download data: BED
Sample
Accession:
GSM741175
ID:
300741175

SRA Run Selector

11.

HeLa 4SU SILAC PAR-CLIP

Organism:
Homo sapiens
Source name:
HeLa 4U SILAC PAR-CLIP
Platform:
GPL9115
Series:
GSE29943
Download data: BED
Sample
Accession:
GSM741174
ID:
300741174

SRA Run Selector

12.

HeLa 4SU DMEM PAR-CLIP

Organism:
Homo sapiens
Source name:
HeLa 4SU DMEM PAR-CLIP
Platform:
GPL9115
Series:
GSE29943
Download data: BED
Sample
Accession:
GSM741173
ID:
300741173

SRA Run Selector

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