GSE32340[Accession] - GEO DataSets - NCBI

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Items: 18

Select item 2000323401.

Reorganization of the host epigenome by a viral oncogene

(Submitter supplied) Adenovirus small e1a causes ~70% reduction in cellular levels of histone H3 lysine 18 acetylation (H3K18ac). It is unclear, however, where this dramatic reduction occurs genome-wide. ChIP-seq revealed that e1a erases 95% of H3K18ac peaks in normal fibroblasts and replaces them with one-third as many at new genomic locations. H3K18ac at promoters and intergenic regions of genes with fibroblast-related functions are relocalized after infection to promoters of highly-induced genes that regulate cell cycling and to new putative enhancers. more...

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platforms:: GPL10999 GPL11154
15 Samples

Download data: BED, TXT, WIG

Series

Accession:: GSE32340

ID:: 200032340

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 1000111542.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10400 Series
180082 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 1000109993.

Illumina Genome Analyzer IIx (Homo sapiens)

Organism:: Homo sapiens

1096 Series
9927 Samples

Platform

Accession:: GPL10999

ID:: 100010999

Select item 3008736944.

e1a H3K4me1 ChIP-seq

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL11154
Series:: GSE32340

Download data: BED, WIG

Sample

Accession:: GSM873694

ID:: 300873694

SRA Run Selector

Select item 3008024105.

e1a-infected input control Hiseq_ChIP-seq

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL11154
Series:: GSE32340

Download data: BED

Sample

Accession:: GSM802410

ID:: 300802410

SRA Run Selector

Select item 3008024086.

mock-infected input Hiseq_ChIP-seq

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL11154
Series:: GSE32340

Download data: BED

Sample

Accession:: GSM802408

ID:: 300802408

SRA Run Selector

Select item 3008024047.

mock-infected p107_ChIP-seq

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL11154
Series:: GSE32340

Download data: BED, WIG

Sample

Accession:: GSM802404

ID:: 300802404

SRA Run Selector

Select item 3008024028.

e1a H3K9ac_ChIP-seq

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL11154
Series:: GSE32340

Download data: BED, WIG

Sample

Accession:: GSM802402

ID:: 300802402

SRA Run Selector

Select item 3008024009.

e1a H3K18ac_ChIP-seq

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL11154
Series:: GSE32340

Download data: BED, WIG

Sample

Accession:: GSM802400

ID:: 300802400

SRA Run Selector

Select item 30080239910.

Mock H3K18ac_ChIP-seq

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL11154
Series:: GSE32340

Download data: BED, WIG

Sample

Accession:: GSM802399

ID:: 300802399

SRA Run Selector

Select item 30080241211.

e1a-infected mRNA sequencing

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL10999
Series:: GSE32340

Download data: BED, WIG

Sample

Accession:: GSM802412

ID:: 300802412

SRA Run Selector

Select item 30080241112.

Mock mRNA control sequencing

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL10999
Series:: GSE32340

Download data: BED, WIG

Sample

Accession:: GSM802411

ID:: 300802411

SRA Run Selector

Select item 30080240913.

e1a_infected input GAIIx _ChIP-seq

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL10999
Series:: GSE32340

Download data: BED

Sample

Accession:: GSM802409

ID:: 300802409

SRA Run Selector

Select item 30080240714.

mock-infected input GAIIx DSG_ChIP-seq

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL10999
Series:: GSE32340

Download data: BED

Sample

Accession:: GSM802407

ID:: 300802407

SRA Run Selector

Select item 30080240615.

mock-infected input GAIIx_ChIP-seq

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL10999
Series:: GSE32340

Download data: BED

Sample

Accession:: GSM802406

ID:: 300802406

SRA Run Selector

Select item 30080240516.

mock-infected p130_ChIP-seq

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL10999
Series:: GSE32340

Download data: BED, WIG

Sample

Accession:: GSM802405

ID:: 300802405

SRA Run Selector

Select item 30080240317.

mock-infected RB1_ChIP-seq

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL10999
Series:: GSE32340

Download data: BED, WIG

Sample

Accession:: GSM802403

ID:: 300802403

SRA Run Selector

Select item 30080240118.

Mock H3K9ac_ChIP-seq

Organism:: Homo sapiens

Source name:: lung fibroblasts

Platform:: GPL10999
Series:: GSE32340

Download data: BED, WIG

Sample

Accession:: GSM802401

ID:: 300802401

SRA Run Selector

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