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Items: 9

1.

Systematic dissection of regulatory motifs in 2,000 predicted human enhancers using a massively parallel reporter assay

(Submitter supplied) We employ a massively parallel reporter assay (MPRA) to measure the ex vivo activities of hundreds of K562 and HepG2 enhancers with known transcription factor motif instances. For seven selected motifs that correspond to known or predicted activators and repressors in the two cell types, we make directed modifications of the bases corresponding to these motifs and observe the changes in enhancer activity.
Organism:
Homo sapiens; Escherichia coli
Type:
Other
Platforms:
GPL11154 GPL14548
6 Samples
Download data: TXT
Series
Accession:
GSE33367
ID:
200033367

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2000 (Escherichia coli)

Organism:
Escherichia coli
83 Series
757 Samples
Download data
Platform
Accession:
GPL14548
ID:
100014548

3.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

4.

K562_mRNA_Rep2

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL11154
Series:
GSE33367
Download data: TXT
Sample
Accession:
GSM825355
ID:
300825355

SRA Run Selector

5.

K562_mRNA_Rep1

Organism:
Homo sapiens
Source name:
K562 cells
Platform:
GPL11154
Series:
GSE33367
Download data: TXT
Sample
Accession:
GSM825354
ID:
300825354

SRA Run Selector

6.

HepG2_mRNA_Rep2

Organism:
Homo sapiens
Source name:
HepG2 cells
Platform:
GPL11154
Series:
GSE33367
Download data: TXT
Sample
Accession:
GSM825353
ID:
300825353

SRA Run Selector

7.

HepG2_mRNA_Rep1

Organism:
Homo sapiens
Source name:
HepG2 cells
Platform:
GPL11154
Series:
GSE33367
Download data: TXT
Sample
Accession:
GSM825352
ID:
300825352

SRA Run Selector

8.

MPRA_Plasmid_Rep2

Organism:
Escherichia coli
Source name:
Plasmid pool
Platform:
GPL14548
Series:
GSE33367
Download data: TXT
Sample
Accession:
GSM825357
ID:
300825357

SRA Run Selector

9.

MPRA_Plasmid_Rep1

Organism:
Escherichia coli
Source name:
Plasmid pool
Platform:
GPL14548
Series:
GSE33367
Download data: TXT
Sample
Accession:
GSM825356
ID:
300825356

SRA Run Selector

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db=gds|term=GSE33367[Accession]|query=1|qty=3|blobid=MCID_66437ad95f31ac49118d28a0|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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