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Items: 7

1.

Nuclear Matrix Factor hnRNP U/SAF-A Exerts a Global Control of Alternative Splicing by Regulating U2 snRNP Maturation

(Submitter supplied) The nuclear matrix associated hnRNP U/SAF-A protein has been implicated in diverse pathways from transcriptional regulation to telomere length control to X inactivation, but the precise mechanism underlying each of these processes has remained elusive. Here, we report hnRNP U as a regulator of SMN2 splicing from a custom RNAi screen. Genome-wide analysis by CLIP-seq reveals that hnRNP U binds virtually to all classes of regulatory non-coding RNAs, including all snRNAs required for splicing of both major and minor classes of introns, leading to the discovery that hnRNP U regulates U2 snRNP maturation and Cajal body morphology in the nucleus. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL9115 GPL11154
4 Samples
Download data: BED
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

Illumina Genome Analyzer II (Homo sapiens)

Platform
Accession:
GPL9115
ID:
100009115
4.

Hela_hnRNPU_CLIP_rep2

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL11154
Series:
GSE34491
Download data: BED
Sample
Accession:
GSM850171
ID:
300850171
5.

Hela_hnRNPU_RNAseq_knockdown

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL9115
Series:
GSE34491
Download data: BED
Sample
Accession:
GSM850173
ID:
300850173
6.

Hela_hnRNPU_RNAseq_control

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL9115
Series:
GSE34491
Download data: BED
Sample
Accession:
GSM850172
ID:
300850172
7.

Hela_hnRNPU_CLIP_rep1

Organism:
Homo sapiens
Source name:
HeLa cells
Platform:
GPL9115
Series:
GSE34491
Download data: BED
Sample
Accession:
GSM850170
ID:
300850170
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Supplemental Content

db=gds|term=GSE34491[Accession]|query=1|qty=2|blobid=MCID_66432ed1ec958f7d10023b6f|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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