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Items: 5

1.

ATRX-mediated chromatin association of histone variant macroH2A1 regulates alpha globin gene expression

(Submitter supplied) The histone variant macroH2A generally associates with transcriptionally inert chromatin, however the factors that regulate its chromatin incorporation remain elusive. Here, we identify the SWI/SNF helicase, ATRX, as a novel macroH2A interacting protein. Unlike its role in assisting H3.3 chromatin deposition, ATRX acts as a negative regulator of macroH2A’s chromatin association. In human erythroleukemic cells deficient for ATRX, ChIP-sequencing studies reveal that macroH2A accumulates at the HBA gene cluster on the subtelomere of chromosome 16, coinciding with the loss of α globin expression. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL11154
3 Samples
Download data: BED, WIG
Series
Accession:
GSE35339
ID:
200035339
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

shluc.Input

Organism:
Homo sapiens
Source name:
Input control
Platform:
GPL11154
Series:
GSE35339
Download data: BED, WIG
Sample
Accession:
GSM866352
ID:
300866352
4.

shluc.mH2A1-ChIP

Organism:
Homo sapiens
Source name:
control knockdown
Platform:
GPL11154
Series:
GSE35339
Download data: BED, WIG
Sample
Accession:
GSM866351
ID:
300866351
5.

sh92.mH2A1-ChIP

Organism:
Homo sapiens
Source name:
ATRX knockdown
Platform:
GPL11154
Series:
GSE35339
Download data: BED, WIG
Sample
Accession:
GSM866350
ID:
300866350
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Supplemental Content

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