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Items: 12

1.

Genome-wide maps of nucleosome occupancy in human lymphoblastoid cell lines

(Submitter supplied) Nucleosomes are important for gene regulation because their arrangement on the genome can control which proteins bind to DNA. Currently, few human nucleosomes are thought to be consistently positioned across cells; however, this has been difficult to assess due to the limited resolution of existing data. We performed paired-end sequencing of micrococcal nuclease-digested chromatin (MNase-seq) from seven lymphoblastoid cell lines and mapped over 3.6 billion MNase-seq fragments to the human genome to create the highest-resolution map of nucleosome occupancy to date in a human cell type. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL10999 GPL11154
9 Samples
Download data: TXT, WIG
Series
Accession:
GSE36979
ID:
200036979
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

Illumina Genome Analyzer IIx (Homo sapiens)

Platform
Accession:
GPL10999
ID:
100010999
4.

HapMap MNase-seq GM19239

Organism:
Homo sapiens
Source name:
lymphoblastoid cell line
Platform:
GPL10999
Series:
GSE36979
Download data: WIG
Sample
Accession:
GSM907791
ID:
300907791
5.

HapMap MNase-seq GM18507

Organism:
Homo sapiens
Source name:
lymphoblastoid cell line
Platform:
GPL10999
Series:
GSE36979
Download data: WIG
Sample
Accession:
GSM907783
ID:
300907783
6.

HapMap MNase-seq GM19238

Organism:
Homo sapiens
Source name:
lymphoblastoid cell line
Platform:
GPL11154
Series:
GSE36979
Download data: WIG
Sample
Accession:
GSM907790
ID:
300907790
7.

HapMap MNase-seq GM19193

Organism:
Homo sapiens
Source name:
lymphoblastoid cell line
Platform:
GPL11154
Series:
GSE36979
Download data: WIG
Sample
Accession:
GSM907789
ID:
300907789
8.

HapMap MNase-seq GM18522 (Single-end)

Organism:
Homo sapiens
Source name:
lymphoblastoid cell line
Platform:
GPL11154
Series:
GSE36979
Download data: WIG
Sample
Accession:
GSM907788
ID:
300907788
9.

HapMap MNase-seq GM18522 (Paired-end)

Organism:
Homo sapiens
Source name:
lymphoblastoid cell line
Platform:
GPL11154
Series:
GSE36979
Download data: WIG
Sample
Accession:
GSM907787
ID:
300907787
10.

HapMap MNase-seq GM18516 (Single-end)

Organism:
Homo sapiens
Source name:
lymphoblastoid cell line
Platform:
GPL11154
Series:
GSE36979
Download data: WIG
Sample
Accession:
GSM907786
ID:
300907786
11.

HapMap MNase-seq GM18516 (Paired-end)

Organism:
Homo sapiens
Source name:
lymphoblastoid cell line
Platform:
GPL11154
Series:
GSE36979
Download data: WIG
Sample
Accession:
GSM907785
ID:
300907785
12.

HapMap MNase-seq GM18508

Organism:
Homo sapiens
Source name:
lymphoblastoid cell line
Platform:
GPL11154
Series:
GSE36979
Download data: WIG
Sample
Accession:
GSM907784
ID:
300907784
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Supplemental Content

db=gds|term=GSE36979[Accession]|query=1|qty=2|blobid=MCID_66445720ec958f7d103423d7|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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