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Items: 15

1.

Differential analysis of HOXA1 in adult cells at isoform resolution by RNA-Seq [Illumina]

(Submitter supplied) High-throughput RNA sequencing (RNA-Seq) has enabled accurate gene discovery and expression estimation, but robust differential analysis of gene and transcript abundances has proven difficult. We present a new algorithm, implemented in the freely available tool Cuffdiff, which integrates transcript-level expression estimation with a method to control for variability across replicate samples. Cuffdiff robustly identifies differentially regulated isoforms and genes and reveals differential splicing or promoter-preference changes. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL15520 GPL11154
12 Samples
Download data: DIFF, FPKM_TRACKING, TXT
Series
Accession:
GSE37703
ID:
200037703

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

Illumina MiSeq (Homo sapiens)

Organism:
Homo sapiens
1124 Series
35832 Samples
Download data
Platform
Accession:
GPL15520
ID:
100015520

3.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

4.

LFB_HOXA1KD_miseq_repC

Organism:
Homo sapiens
Source name:
LFB_HOXA1KD_miseq_repC
Platform:
GPL15520
Series:
GSE37703 GSE37704
Download data
Sample
Accession:
GSM925773
ID:
300925773

SRA Run Selector

5.

LFB_HOXA1KD_miseq_repB

Organism:
Homo sapiens
Source name:
LFB_HOXA1KD_miseq_repB
Platform:
GPL15520
Series:
GSE37703 GSE37704
Download data
Sample
Accession:
GSM925772
ID:
300925772

SRA Run Selector

6.

LFB_HOXA1KD_miseq_repA

Organism:
Homo sapiens
Source name:
LFB_HOXA1KD_miseq_repA
Platform:
GPL15520
Series:
GSE37703 GSE37704
Download data
Sample
Accession:
GSM925771
ID:
300925771

SRA Run Selector

7.

LFB_scramble_miseq_repC

Organism:
Homo sapiens
Source name:
LFB_scramble_miseq_repC
Platform:
GPL15520
Series:
GSE37703 GSE37704
Download data
Sample
Accession:
GSM925770
ID:
300925770

SRA Run Selector

8.

LFB_scramble_miseq_repB

Organism:
Homo sapiens
Source name:
LFB_scramble_miseq_repB
Platform:
GPL15520
Series:
GSE37703 GSE37704
Download data
Sample
Accession:
GSM925769
ID:
300925769

SRA Run Selector

9.

LFB_scramble_miseq_repA

Organism:
Homo sapiens
Source name:
LFB_scramble_miseq_repA
Platform:
GPL15520
Series:
GSE37703 GSE37704
Download data
Sample
Accession:
GSM925768
ID:
300925768

SRA Run Selector

10.

LFB_HOXA1KD_hiseq_repC

Organism:
Homo sapiens
Source name:
LFB_HOXA1KD_hiseq_repC
Platform:
GPL11154
Series:
GSE37703 GSE37704
Download data
Sample
Accession:
GSM925767
ID:
300925767

SRA Run Selector

11.

LFB_HOXA1KD_hiseq_repB

Organism:
Homo sapiens
Source name:
LFB_HOXA1KD_hiseq_repB
Platform:
GPL11154
Series:
GSE37703 GSE37704
Download data
Sample
Accession:
GSM925766
ID:
300925766

SRA Run Selector

12.

LFB_HOXA1KD_hiseq_repA

Organism:
Homo sapiens
Source name:
LFB_HOXA1KD_hiseq_repA
Platform:
GPL11154
Series:
GSE37703 GSE37704
Download data
Sample
Accession:
GSM925765
ID:
300925765

SRA Run Selector

13.

LFB_scramble_hiseq_repC

Organism:
Homo sapiens
Source name:
LFB_scramble_hiseq_repC
Platform:
GPL11154
Series:
GSE37703 GSE37704
Download data
Sample
Accession:
GSM925764
ID:
300925764

SRA Run Selector

14.

LFB_scramble_hiseq_repB

Organism:
Homo sapiens
Source name:
LFB_scramble_hiseq_repB
Platform:
GPL11154
Series:
GSE37703 GSE37704
Download data
Sample
Accession:
GSM925763
ID:
300925763

SRA Run Selector

15.

LFB_scramble_hiseq_repA

Organism:
Homo sapiens
Source name:
LFB_scramble_hiseq_repA
Platform:
GPL11154
Series:
GSE37703 GSE37704
Download data
Sample
Accession:
GSM925762
ID:
300925762

SRA Run Selector

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