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Items: 3

1.

GRO-seq from HCT116 cells

(Submitter supplied) The majority of transcription studies examine steady-state RNA . However steady-state RNA is not a true reflection of the transcriptome, because the RNA levels are affected by both transcription rate and degradation rate. In this experiment we measured the amount of transcription occurring in HCT116 colon cancer cells, regardless of degradation, using GRO-seq (global nuclear run-on sequencing). This information demonstrates that many genes have a pile-up of transcriptionally-engaged polymerase near their 5'-end.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Other
Platform:
GPL11154
1 Sample
Download data: BEDGRAPH
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

1hr DMSO treated HCT116

Organism:
Homo sapiens
Source name:
colorectal cancer cells
Platform:
GPL11154
Series:
GSE38140
Download data: BEDGRAPH
Sample
Accession:
GSM1124062
ID:
301124062
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Supplemental Content

db=gds|term=GSE38140[Accession]|query=1|qty=2|blobid=MCID_66456650f63069282766dff1|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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