GSE38233[Accession] - GEO DataSets - NCBI

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Select item 2000382331.

Study functions of ADAR proteins using next generation sequencing of genome and transcriptome

(Submitter supplied) Adenosine deaminases, RNA specific (ADAR) are proteins that deaminate adenosine to inosine which is then recognized in translation as guanosine. To study the roles of ADAR proteins in RNA editing and gene regulation, we carried out DNA and RNA sequencing, RNA interference and RNA-immunoprecipitation in human B-cells. We also characterized the ADAR protein complex by mass spectrometry. The results uncovered over 60,000 sites where the adenosines (A) are edited to guanosine (G) and several thousand genes whose expression levels are influenced by ADAR. more...

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL11154
20 Samples

Download data: BED, TXT

Series

Accession:: GSE38233

ID:: 200038233

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 1000111542.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10400 Series
180082 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 3009389103.

Sample_RNA-IP_IgG_GM12750

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Sample

Accession:: GSM938910

ID:: 300938910

SRA Run Selector

Select item 3009389094.

Sample_RNA-IP_ADAR_GM12750

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Sample

Accession:: GSM938909

ID:: 300938909

SRA Run Selector

Select item 3009389085.

Sample_RNA-IP_IgG_GM12004

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Sample

Accession:: GSM938908

ID:: 300938908

SRA Run Selector

Select item 3009389076.

Sample_RNA-IP_ADAR_GM12004

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Sample

Accession:: GSM938907

ID:: 300938907

SRA Run Selector

Select item 3009389067.

Sample_GM12750_nt_Dtime

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Sample

Accession:: GSM938906

ID:: 300938906

SRA Run Selector

Select item 3009389058.

Sample_GM12750_ADARkd_DTime

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Sample

Accession:: GSM938905

ID:: 300938905

SRA Run Selector

Select item 3009389049.

Sample_GM12750_ADARkd_CTime

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Sample

Accession:: GSM938904

ID:: 300938904

SRA Run Selector

Select item 30093890310.

Sample_GM12750_ADARkd_BTime

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Sample

Accession:: GSM938903

ID:: 300938903

SRA Run Selector

Select item 30093890211.

Sample_GM12750_ADARkd_ATime

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Sample

Accession:: GSM938902

ID:: 300938902

SRA Run Selector

Select item 30093890112.

Sample_GM12004_ADAR2_kd

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Download data: TXT

Sample

Accession:: GSM938901

ID:: 300938901

SRA Run Selector

Select item 30093890013.

Sample_GM12004_ADARkd

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Download data: TXT

Sample

Accession:: GSM938900

ID:: 300938900

SRA Run Selector

Select item 30093889914.

Sample_GM12004_NT

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Download data: TXT

Sample

Accession:: GSM938899

ID:: 300938899

SRA Run Selector

Select item 30093889815.

Sample_GM12750_ADAR_KD

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Download data: TXT

Sample

Accession:: GSM938898

ID:: 300938898

SRA Run Selector

Select item 30093889716.

Sample_GM12750_NT

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Download data: TXT

Sample

Accession:: GSM938897

ID:: 300938897

SRA Run Selector

Select item 30093889617.

Sample_GM12750_Directional_NT

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Sample

Accession:: GSM938896

ID:: 300938896

SRA Run Selector

Select item 30093889518.

Sample_GM12750_Directional_ADAR_KD

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Sample

Accession:: GSM938895

ID:: 300938895

SRA Run Selector

Select item 30093889419.

Sample_GM12004_Directional

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Sample

Accession:: GSM938894

ID:: 300938894

SRA Run Selector

Select item 30093889320.

Sample_GM12750_Directional

Organism:: Homo sapiens

Source name:: cultured B-cells

Platform:: GPL11154
Series:: GSE38233

Sample

Accession:: GSM938893

ID:: 300938893

SRA Run Selector

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