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Items: 7

1.

Induced Cdx2 binding in embryonic stem cells and endodermal cells

(Submitter supplied) Regulatory proteins can bind to different sets of genomic targets in various cell types or conditions. To reliably characterize such condition-specific regulatory binding we introduce MultiGPS, an integrated machine learning approach for the analysis of multiple related ChIP-seq experiments. MultiGPS is based on a generalized Expectation Maximization framework that shares information across multiple experiments for binding event discovery. more...
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL9250
5 Samples
Download data: BAM, BW, WIG
Series
Accession:
GSE39435
ID:
200039435
2.

Illumina Genome Analyzer II (Mus musculus)

Platform
Accession:
GPL9250
ID:
100009250
3.

Input sequencing in endoderm cells

Organism:
Mus musculus
Source name:
endoderm
Platform:
GPL9250
Series:
GSE39435
Download data: BW
Sample
Accession:
GSM1357919
ID:
301357919
4.

ChIP-seq analysis of induced V5-tagged Cdx2 (iCdx2-V5) in endoderm cells

Organism:
Mus musculus
Source name:
endoderm
Platform:
GPL9250
Series:
GSE39435
Download data: BW
Sample
Accession:
GSM1357918
ID:
301357918
5.

Pseudo-ChIP control using anti-V5 in progenitor motor neurons (Day_4 )

Organism:
Mus musculus
Source name:
Pseudo IP against V5
Platform:
GPL9250
Series:
GSE39435
Download data: BAM, WIG
Sample
Accession:
GSM982084
ID:
300982084
6.

induced FLAG-tagged truncated Cdx2 (iFLAG-Cdx2-truncated) in embryonic stem cells [ChIP-seq]

Organism:
Mus musculus
Source name:
embryonic stem cells
Platform:
GPL9250
Series:
GSE39435
Download data: BW
Sample
Accession:
GSM968719
ID:
300968719
7.

induced V5-tagged Cdx2 (iCdx2-V5) in embryonic stem cells [ChIP-seq]

Organism:
Mus musculus
Source name:
embryonic stem cells
Platform:
GPL9250
Series:
GSE39435
Download data: BW
Sample
Accession:
GSM968718
ID:
300968718
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Supplemental Content

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