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Items: 16

1.

Conserved DNA methylation patterns in healthy blood cells and extensive changes in leukemia measured by a new quantitative technique.

(Submitter supplied) We describe a simple method, Digital Restriction Enzyme Analysis of Methylation (DREAM), based on sequential DNA digestion with a pair of methylation-blocked and methylation-tolerant neoschizomeric restriction enzymes SmaI/XmaI followed by end repair and ultra-deep sequencing. DREAM provides information on 160,000 unique CpG sites of which 39,000 are in CpG islands, and 33,000 are at transcription start sites (-1 kb to +1 kb) of 13,139 RefSeq genes. more...
Organism:
Homo sapiens
Type:
Methylation profiling by high throughput sequencing
Platforms:
GPL11154 GPL9115
13 Samples
Download data: TXT
Series
Accession:
GSE39787
ID:
200039787

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

3.

Illumina Genome Analyzer II (Homo sapiens)

Organism:
Homo sapiens
753 Series
6113 Samples
Download data
Platform
Accession:
GPL9115
ID:
100009115

4.

NWBC4_replicate3

Organism:
Homo sapiens
Source name:
healthy white blood cells from adult blood
Platform:
GPL11154
Series:
GSE39787
Download data: TXT
Sample
Accession:
GSM979031
ID:
300979031

SRA Run Selector

5.

NWBC4_replicate2

Organism:
Homo sapiens
Source name:
healthy white blood cells from adult blood
Platform:
GPL11154
Series:
GSE39787
Download data: TXT
Sample
Accession:
GSM979030
ID:
300979030

SRA Run Selector

6.

NWBC2_replicate2

Organism:
Homo sapiens
Source name:
healthy white blood cells from adult blood
Platform:
GPL11154
Series:
GSE39787
Download data: TXT
Sample
Accession:
GSM979027
ID:
300979027

SRA Run Selector

7.

NWBC2_replicate1

Organism:
Homo sapiens
Source name:
healthy white blood cells from adult blood
Platform:
GPL11154
Series:
GSE39787
Download data: TXT
Sample
Accession:
GSM979026
ID:
300979026

SRA Run Selector

8.

CB2

Organism:
Homo sapiens
Source name:
healthy white blood cells from cord blood
Platform:
GPL11154
Series:
GSE39787
Download data: TXT
Sample
Accession:
GSM979021
ID:
300979021

SRA Run Selector

9.

CB1

Organism:
Homo sapiens
Source name:
healthy white blood cells from cord blood
Platform:
GPL11154
Series:
GSE39787
Download data: TXT
Sample
Accession:
GSM979020
ID:
300979020

SRA Run Selector

10.

NWBC4_replicate1

Organism:
Homo sapiens
Source name:
healthy white blood cells from adult blood
Platform:
GPL9115
Series:
GSE39787
Download data: TXT
Sample
Accession:
GSM979029
ID:
300979029

SRA Run Selector

11.

NWBC3

Organism:
Homo sapiens
Source name:
healthy white blood cells from adult blood
Platform:
GPL9115
Series:
GSE39787
Download data: TXT
Sample
Accession:
GSM979028
ID:
300979028

SRA Run Selector

12.

NWBC1_replicate2

Organism:
Homo sapiens
Source name:
healthy white blood cells from adult blood
Platform:
GPL9115
Series:
GSE39787
Download data: TXT
Sample
Accession:
GSM979025
ID:
300979025

SRA Run Selector

13.

NWBC1_replicate1

Organism:
Homo sapiens
Source name:
healthy white blood cells from adult blood
Platform:
GPL9115
Series:
GSE39787
Download data: TXT
Sample
Accession:
GSM979024
ID:
300979024

SRA Run Selector

14.

K562

Organism:
Homo sapiens
Source name:
K562 cell line
Platform:
GPL9115
Series:
GSE39787
Download data: TXT
Sample
Accession:
GSM979023
ID:
300979023

SRA Run Selector

15.

HEL

Organism:
Homo sapiens
Source name:
HEL cell line
Platform:
GPL9115
Series:
GSE39787
Download data: TXT
Sample
Accession:
GSM979022
ID:
300979022

SRA Run Selector

16.

AML

Organism:
Homo sapiens
Source name:
acute myeloid leukemia bone marrow
Platform:
GPL9115
Series:
GSE39787
Download data: TXT
Sample
Accession:
GSM979019
ID:
300979019

SRA Run Selector

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