GSE40705[Accession] - GEO DataSets - NCBI

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Select item 2000407051.

Comprehensive comparative analysis of RNA sequencing methods for degraded or low input samples

(Submitter supplied) RNA-Seq is an effective method to study the transcriptome, but can be difficult to apply to scarce or degraded RNA from fixed clinical samples, rare cell populations, or cadavers. Recent studies have proposed several methods for RNA-Seq of low quality and/or low quantity samples, but their relative merits have not been systematically analyzed. Here, we compare five such methods using a comprehensive set of metrics, relevant to applications such as transcriptome annotation, transcript discovery, and gene expression. more...

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL11154 GPL16791
18 Samples

Download data: TXT

Series

Accession:: GSE40705

ID:: 200040705

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 1000167912.

Illumina HiSeq 2500 (Homo sapiens)

Organism:: Homo sapiens

11802 Series
336451 Samples

Platform

Accession:: GPL16791

ID:: 100016791

Select item 1000111543.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10400 Series
180082 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 3011292454.

Organism:: Homo sapiens

Source name:: human normal pancreas tissue (Zyagen)

Platform:: GPL16791
Series:: GSE40705

Sample

Accession:: GSM1129245

ID:: 301129245

SRA Run Selector

Select item 3011292395.

Organism:: Homo sapiens

Source name:: human CML cell line K-562 grown in tissue culture (Ambion)

Platform:: GPL11154
Series:: GSE40705

Sample

Accession:: GSM1129239

ID:: 301129239

SRA Run Selector

Select item 3011292446.

Pancreas_RiboZero

Organism:: Homo sapiens

Source name:: human normal pancreas tissue (Zyagen)

Platform:: GPL16791
Series:: GSE40705

Sample

Accession:: GSM1129244

ID:: 301129244

SRA Run Selector

Select item 3011292437.

Pancreas_RNaseH

Organism:: Homo sapiens

Source name:: human normal pancreas tissue (Zyagen)

Platform:: GPL16791
Series:: GSE40705

Sample

Accession:: GSM1129243

ID:: 301129243

SRA Run Selector

Select item 3011292428.

Organism:: Homo sapiens

Source name:: human normal kidney section (Cybrdi)

Platform:: GPL16791
Series:: GSE40705

Sample

Accession:: GSM1129242

ID:: 301129242

SRA Run Selector

Select item 3011292419.

Organism:: Homo sapiens

Source name:: human normal kidney section (Cybrdi)

Platform:: GPL16791
Series:: GSE40705

Sample

Accession:: GSM1129241

ID:: 301129241

SRA Run Selector

Select item 30112924010.

Organism:: Homo sapiens

Source name:: human normal kidney section (Cybrdi)

Platform:: GPL16791
Series:: GSE40705

Sample

Accession:: GSM1129240

ID:: 301129240

SRA Run Selector

Select item 30099953711.

Organism:: Homo sapiens

Source name:: human CML cell line K-562 grown in tissue culture (Ambion)

Platform:: GPL11154
Series:: GSE40705

Download data: TXT

Sample

Accession:: GSM999537

ID:: 300999537

SRA Run Selector

Select item 30099953612.

Organism:: Homo sapiens

Source name:: human CML cell line K-562 grown in tissue culture (Ambion)

Platform:: GPL11154
Series:: GSE40705

Download data: TXT

Sample

Accession:: GSM999536

ID:: 300999536

SRA Run Selector

Select item 30099953513.

Organism:: Homo sapiens

Source name:: human CML cell line K-562 grown in tissue culture (Ambion)

Platform:: GPL11154
Series:: GSE40705

Download data: TXT

Sample

Accession:: GSM999535

ID:: 300999535

SRA Run Selector

Select item 30099953414.

Organism:: Homo sapiens

Source name:: human CML cell line K-562 grown in tissue culture (Ambion)

Platform:: GPL11154
Series:: GSE40705

Download data: TXT

Sample

Accession:: GSM999534

ID:: 300999534

SRA Run Selector

Select item 30099953315.

Organism:: Homo sapiens

Source name:: human CML cell line K-562 grown in tissue culture (Ambion)

Platform:: GPL11154
Series:: GSE40705

Download data: TXT

Sample

Accession:: GSM999533

ID:: 300999533

SRA Run Selector

Select item 30099953216.

Organism:: Homo sapiens

Source name:: human CML cell line K-562 grown in tissue culture (Ambion)

Platform:: GPL11154
Series:: GSE40705

Download data: TXT

Sample

Accession:: GSM999532

ID:: 300999532

SRA Run Selector

Select item 30099953117.

Organism:: Homo sapiens

Source name:: human CML cell line K-562 grown in tissue culture (Ambion)

Platform:: GPL11154
Series:: GSE40705

Download data: TXT

Sample

Accession:: GSM999531

ID:: 300999531

SRA Run Selector

Select item 30099953018.

Organism:: Homo sapiens

Source name:: human CML cell line K-562 grown in tissue culture (Ambion)

Platform:: GPL11154
Series:: GSE40705

Download data: TXT

Sample

Accession:: GSM999530

ID:: 300999530

SRA Run Selector

Select item 30099952919.

Organism:: Homo sapiens

Source name:: human CML cell line K-562 grown in tissue culture (Ambion)

Platform:: GPL11154
Series:: GSE40705

Download data: TXT

Sample

Accession:: GSM999529

ID:: 300999529

SRA Run Selector

Select item 30099952820.

Organism:: Homo sapiens

Source name:: human CML cell line K-562 grown in tissue culture (Ambion)

Platform:: GPL11154
Series:: GSE40705

Download data: TXT

Sample

Accession:: GSM999528

ID:: 300999528

SRA Run Selector

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