GSE40739[Accession] - GEO DataSets - NCBI

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Select item 2000407391.

Genome-wide quantitative enhancer activity maps identified by STARR-seq

(Submitter supplied) Genomic enhancers are important regulators of gene expression, but their identification is a challenge and methods depend on indirect measures of activity. We developed a method termed STARR-seq to directly and quantitatively assess enhancer activity for millions of candidates from arbitrary sources of DNA, enabling screens across entire genomes. When applied to the Drosophila genome, STARR-seq identifies thousands of cell type-specific enhancers across a broad continuum of strengths, linking differential gene expression to differences in enhancer activity and creating a genome-wide quantitative enhancer map. more...

Organism:: Homo sapiens; Drosophila melanogaster

Type:: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL11154 GPL11203 GPL13304
18 Samples

Download data: TXT

Series

Accession:: GSE40739

ID:: 200040739

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000133042.

Illumina HiSeq 2000 (Drosophila melanogaster)

Organism:: Drosophila melanogaster

902 Series
18220 Samples

Platform

Accession:: GPL13304

ID:: 100013304

Select item 1000112033.

Illumina Genome Analyzer IIx (Drosophila melanogaster)

Organism:: Drosophila melanogaster

114 Series
1561 Samples

Platform

Accession:: GPL11203

ID:: 100011203

Select item 1000111544.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10400 Series
180082 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 3010556055.

HeLa_BAC_STARRseq_input

Organism:: Homo sapiens

Source name:: BAC library (in STARR-seq vector)

Platform:: GPL11154
Series:: GSE40739

Sample

Accession:: GSM1055605

ID:: 301055605

SRA Run Selector

Select item 3010556046.

HeLa_BAC_STARRseq

Organism:: Homo sapiens

Source name:: HeLa Kyoto cells

Platform:: GPL11154
Series:: GSE40739

Download data: TXT

Sample

Accession:: GSM1055604

ID:: 301055604

SRA Run Selector

Select item 3010004117.

OSC DHS-seq Input

Organism:: Drosophila melanogaster

Source name:: OSC cells

Platform:: GPL11203
Series:: GSE40739

Sample

Accession:: GSM1000411

ID:: 301000411

SRA Run Selector

Select item 3010004108.

OSC DHS-seq biological replicate 2

Organism:: Drosophila melanogaster

Source name:: OSC cells

Platform:: GPL11203
Series:: GSE40739

Download data: TXT

Sample

Accession:: GSM1000410

ID:: 301000410

SRA Run Selector

Select item 3010004099.

OSC DHS-seq biological replicate 1

Organism:: Drosophila melanogaster

Source name:: OSC cells

Platform:: GPL11203
Series:: GSE40739

Download data: TXT

Sample

Accession:: GSM1000409

ID:: 301000409

SRA Run Selector

Select item 30100040810.

S2 DHS-seq Input

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL11203
Series:: GSE40739

Sample

Accession:: GSM1000408

ID:: 301000408

SRA Run Selector

Select item 30100040711.

S2 DHS-seq biological replicate 2

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL11203
Series:: GSE40739

Download data: TXT

Sample

Accession:: GSM1000407

ID:: 301000407

SRA Run Selector

Select item 30100040612.

S2 DHS-seq biological replicate 1

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL11203
Series:: GSE40739

Download data: TXT

Sample

Accession:: GSM1000406

ID:: 301000406

SRA Run Selector

Select item 30100040513.

STARR-seq Input library 500

Organism:: Drosophila melanogaster

Source name:: whole genome library (in STARR-seq vector)

Platform:: GPL11203
Series:: GSE40739

Sample

Accession:: GSM1000405

ID:: 301000405

SRA Run Selector

Select item 30100040414.

STARR-seq Input library 5.2

Organism:: Drosophila melanogaster

Source name:: whole genome library (in STARR-seq vector)

Platform:: GPL11203
Series:: GSE40739

Sample

Accession:: GSM1000404

ID:: 301000404

SRA Run Selector

Select item 30100040315.

OSC STARR-seq biological replicate 2

Organism:: Drosophila melanogaster

Source name:: OSC cells

Platform:: GPL11203
Series:: GSE40739

Download data: TXT

Sample

Accession:: GSM1000403

ID:: 301000403

SRA Run Selector

Select item 30100040216.

OSC STARR-seq biological replicate 1

Organism:: Drosophila melanogaster

Source name:: OSC cells

Platform:: GPL11203
Series:: GSE40739

Download data: TXT

Sample

Accession:: GSM1000402

ID:: 301000402

SRA Run Selector

Select item 30100040117.

S2 STARR-seq biological replicate 2

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL11203
Series:: GSE40739

Download data: TXT

Sample

Accession:: GSM1000401

ID:: 301000401

SRA Run Selector

Select item 30100040018.

S2 STARR-seq biological replicate 1

Organism:: Drosophila melanogaster

Source name:: S2 cells

Platform:: GPL11203
Series:: GSE40739

Download data: TXT

Sample

Accession:: GSM1000400

ID:: 301000400

SRA Run Selector

Select item 30100041519.

OSC RNA-seq biological replicate 2

Organism:: Drosophila melanogaster

Source name:: OSC cells

Platform:: GPL13304
Series:: GSE40739

Download data: TXT

Sample

Accession:: GSM1000415

ID:: 301000415

SRA Run Selector

Select item 30100041420.

OSC RNA-seq biological replicate 1

Organism:: Drosophila melanogaster

Source name:: OSC cells

Platform:: GPL13304
Series:: GSE40739

Download data: TXT

Sample

Accession:: GSM1000414

ID:: 301000414

SRA Run Selector

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