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Items: 5

1.

Genome-wide mapping of nucleosome positioning and DNA methylation within Individual DNA molecules

(Submitter supplied) DNA methylation and nucleosome positioning work together to generate chromatin structures that regulate gene expression. Nucleosomes are typically mapped using nuclease digestion requiring significant amounts of material and varying enzyme concentrations. We have developed a method (NOMe-seq) that uses a GpC methyltransferase (M.CviPI) and next generation sequencing to generate a high resolution footprint of nucleosome positioning genome-wide using less than 1 million cells while retaining endogenous DNA methylation information from the same DNA strand. more...
Organism:
Homo sapiens
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL11154
3 Samples
Download data: WIG
Series
Accession:
GSE40770
ID:
200040770
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

NOMe-seq GBM248

Organism:
Homo sapiens
Source name:
glioblastoma cells
Platform:
GPL11154
Series:
GSE40770
Download data: WIG
Sample
Accession:
GSM1001127
ID:
301001127
4.

NOMe-seq GBM157

Organism:
Homo sapiens
Source name:
glioblastoma cells
Platform:
GPL11154
Series:
GSE40770
Download data: WIG
Sample
Accession:
GSM1001126
ID:
301001126
5.

NOMe-seq IMR90

Organism:
Homo sapiens
Source name:
lung fibroblast
Platform:
GPL11154
Series:
GSE40770
Download data: WIG
Sample
Accession:
GSM1001125
ID:
301001125
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Supplemental Content

db=gds|term=GSE40770[Accession]|query=1|qty=2|blobid=MCID_66442135ec958f7d101eedba|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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