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Items: 6

1.

CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex

(Submitter supplied) The exon junction complex (EJC) is a central effector of mRNAs fate, linking nuclear processing to mRNA transport, translation and surveillance. Little is known about its transcriptome-wide targets. We used high-throughput sequencing after crosslinking and immunoprecipitation (HITS-CLIP) in human cells to identify the binding sites of the DEAD-box helicase eIF4AIII, an EJC core component. CLIP reads form peaks mainly located in spliced mRNAs. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL11154 GPL10999
3 Samples
Download data: BEDGRAPH
Series
Accession:
GSE40778
ID:
200040778
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

Illumina Genome Analyzer IIx (Homo sapiens)

Platform
Accession:
GPL10999
ID:
100010999
4.

HeLa mRNA-seq

Organism:
Homo sapiens
Source name:
HeLa mRNA-seq
Platform:
GPL11154
Series:
GSE40778
Download data: BEDGRAPH
Sample
Accession:
GSM1001332
ID:
301001332
5.

HeLa eIF4AIII CLIP-seq 2

Organism:
Homo sapiens
Source name:
HeLa eIF4AIII CLIP-seq
Platform:
GPL10999
Series:
GSE40778
Download data: BEDGRAPH
Sample
Accession:
GSM1001331
ID:
301001331
6.

HeLa eIF4AIII CLIP-seq 1

Organism:
Homo sapiens
Source name:
HeLa eIF4AIII CLIP-seq
Platform:
GPL10999
Series:
GSE40778
Download data: BEDGRAPH
Sample
Accession:
GSM1001330
ID:
301001330
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Supplemental Content

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