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Items: 16

1.

The Cellular EJC Interactome Reveals Higher-Order mRNP Structure and an EJC-SR Protein Nexus

(Submitter supplied) To uncover exon junction complex (EJC) deposition sites on cellular mRNAs, RNA footprints of EJC immuo-purified from HEK293 cells were deep sequenced. The analysis of these data revealed that major “canonical” EJC occupancy site in vivo lies 24 nucleotides upstream of exon junctions (-24 position) and that the majority of exon junctions carry an EJC. Unexpectedly, we find that many sites further upstream of -24 position are also enriched in these EJC footprints. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL9442 GPL11154 GPL13393
12 Samples
Download data: BED
Series
Accession:
GSE41154
ID:
200041154

PubMed Full text in PMC Similar studies SRA Run Selector

2.

AB SOLiD 4 System (Homo sapiens)

Organism:
Homo sapiens
59 Series
570 Samples
Download data
Platform
Accession:
GPL13393
ID:
100013393

3.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

4.

AB SOLiD System 3.0 (Homo sapiens)

Organism:
Homo sapiens
56 Series
360 Samples
Download data
Platform
Accession:
GPL9442
ID:
100009442

5.

RNA-Seq

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL9442
Series:
GSE41154
Download data: BED
Sample
Accession:
GSM1009421
ID:
301009421

SRA Run Selector

6.

FLAG-eIF4AIII-HMW RIP-Seq

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL9442
Series:
GSE41154
Download data: BED
Sample
Accession:
GSM1009420
ID:
301009420

SRA Run Selector

7.

FLAG-eIF4AIII:Y14 (+ formald) RIPiT-Seq

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL9442
Series:
GSE41154
Download data: BED
Sample
Accession:
GSM1009419
ID:
301009419

SRA Run Selector

8.

FLAG-Magoh:eIF4AIII Rep 3 RIPiT-Seq

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL9442
Series:
GSE41154
Download data: BED
Sample
Accession:
GSM1009418
ID:
301009418

SRA Run Selector

9.

FLAG-Magoh:eIF4AIII Rep 2 RIPiT-Seq

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL9442
Series:
GSE41154
Download data: BED
Sample
Accession:
GSM1009417
ID:
301009417

SRA Run Selector

10.

FLAG-Magoh:eIF4AIII Rep 1 RIPiT-Seq

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL9442
Series:
GSE41154
Download data: BED
Sample
Accession:
GSM1009416
ID:
301009416

SRA Run Selector

11.

FLAG-eIF4AIII:Y14 Rep 2 RIPiT-Seq

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL9442
Series:
GSE41154
Download data: BED
Sample
Accession:
GSM1009415
ID:
301009415

SRA Run Selector

12.

FLAG-eIF4AIII:Y14 Rep 1 RIPiT-Seq

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL9442
Series:
GSE41154
Download data: BED
Sample
Accession:
GSM1009414
ID:
301009414

SRA Run Selector

13.

FLAG only:PHGDH RIPiT-Seq

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL9442
Series:
GSE41154
Download data: BED
Sample
Accession:
GSM1009413
ID:
301009413

SRA Run Selector

14.

FLAG only:Y14 RIPiT-Seq

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL9442
Series:
GSE41154
Download data: BED
Sample
Accession:
GSM1009412
ID:
301009412

SRA Run Selector

15.

Nuclear mRNP protection (mRNP-Seq)

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL13393
Series:
GSE41154
Download data: BED
Sample
Accession:
GSM1009422
ID:
301009422

SRA Run Selector

16.

FLAG-Magoh:eIF4AIII-long RIPiT-Seq

Organism:
Homo sapiens
Source name:
HEK293 cells
Platform:
GPL11154
Series:
GSE41154
Download data: BED
Sample
Accession:
GSM1009423
ID:
301009423

SRA Run Selector

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