GSE42563[Accession] - GEO DataSets - NCBI

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Items: 8

Select item 2000425631.

DICER- and AGO3-dependent generation of retinoic acid-induced DR2 Alu RNAs regulates human stem cell proliferation (RNA-seq)

(Submitter supplied) Although liganded nuclear receptors have been established to regulate RNA polymerase II (Pol II)-dependent transcription units, their role in regulating Pol III-transcribed DNA repeats remains largely unknown. Here we report that ~2-3% of the ~100,000-200,000 total human DR2 Alu repeats located in proximity to activated Pol II transcription units are activated by the retinoic acid receptor (RAR) in human embryonic stem cells to generate Pol III-dependent RNAs. more...

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL9115 GPL11154
5 Samples

Download data: BED, BEDGRAPH, TXT

Series

Accession:: GSE42563

ID:: 200042563

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 1000111542.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10400 Series
180082 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 1000091153.

Illumina Genome Analyzer II (Homo sapiens)

Organism:: Homo sapiens

753 Series
6113 Samples

Platform

Accession:: GPL9115

ID:: 100009115

Select item 3010451784.

Organism:: Homo sapiens

Source name:: NTera2/D1 cells

Platform:: GPL11154
Series:: GSE42563 GSE42602

Download data: BED, BEDGRAPH

Sample

Accession:: GSM1045178

ID:: 301045178

SRA Run Selector

Select item 3010451775.

minusRA_GRO-seq

Organism:: Homo sapiens

Source name:: NTera2/D1 cells

Platform:: GPL11154
Series:: GSE42563 GSE42602

Download data: BED, BEDGRAPH

Sample

Accession:: GSM1045177

ID:: 301045177

SRA Run Selector

Select item 3010451746.

small_RNA-seq_plusRA

Organism:: Homo sapiens

Source name:: NTera2/D1 cells

Platform:: GPL9115
Series:: GSE42563 GSE42602

Download data: TXT

Sample

Accession:: GSM1045174

ID:: 301045174

Select item 3010451737.

Organism:: Homo sapiens

Source name:: NTera2/D1 cells

Platform:: GPL9115
Series:: GSE42563 GSE42602

Download data: TXT

Sample

Accession:: GSM1045173

ID:: 301045173

Select item 3010451728.

minusRA_RNA-seq

Organism:: Homo sapiens

Source name:: NTera2/D1 cells

Platform:: GPL9115
Series:: GSE42563 GSE42602

Download data: TXT

Sample

Accession:: GSM1045172

ID:: 301045172

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GSE42563[Accession] (8)
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