GSE43070[Accession] - GEO DataSets - NCBI

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Select item 2000430701.

Genome-wide Analysis of Chromatin Interactions in Human Cells

(Submitter supplied) Millions of cis-regulatory sequences have recently been found in the human genome, but the function of most cis-elements are not yet clear, in part due to the difficulty in determining their regulatory targets, which are often located millions of base pairs away and separated by one or more unrelated genes. To address this problem, the Hi-C method has been developed to identify long-range looping interactions in a genome-wide, unbiased fashion. more...

Organism:: Homo sapiens

Type:: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL10999 GPL11154
53 Samples

Download data: BED, TXT

Series

Accession:: GSE43070

ID:: 200043070

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 1000111542.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10400 Series
180082 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 1000109993.

Illumina Genome Analyzer IIx (Homo sapiens)

Organism:: Homo sapiens

1096 Series
9927 Samples

Platform

Accession:: GPL10999

ID:: 100010999

Select item 3011540474.

ChIP-Seq H3K27a IMR90+IFN-γ

Organism:: Homo sapiens

Source name:: fetal lung fibroblast

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154047

ID:: 301154047

SRA Run Selector

Select item 3011540465.

ChIP-Seq H3K27a HUVEC+TNF-α

Organism:: Homo sapiens

Source name:: primary HUVEC cells

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154046

ID:: 301154046

SRA Run Selector

Select item 3011540456.

ChIP-Seq H3K27ac HUVEC

Organism:: Homo sapiens

Source name:: primary HUVEC cells

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154045

ID:: 301154045

SRA Run Selector

Select item 3011540447.

ChIP-Seq p65 HUVEC+TNF-α

Organism:: Homo sapiens

Source name:: primary HUVEC cells

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154044

ID:: 301154044

SRA Run Selector

Select item 3011540438.

ChIP-Seq input IMR90+IFN-γ

Organism:: Homo sapiens

Source name:: fetal lung fibroblast

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154043

ID:: 301154043

SRA Run Selector

Select item 3011540429.

ChIP-Seq input HUVEC+TNF-α

Organism:: Homo sapiens

Source name:: primary HUVEC cells

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154042

ID:: 301154042

SRA Run Selector

Select item 30115404110.

ChIP-Seq input HUVEC

Organism:: Homo sapiens

Source name:: primary HUVEC cells

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154041

ID:: 301154041

SRA Run Selector

Select item 30115404011.

RNA-Seq MCF7 + E2

Organism:: Homo sapiens

Source name:: breast cancer MCF7 cells

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154040

ID:: 301154040

SRA Run Selector

Select item 30115403912.

Organism:: Homo sapiens

Source name:: breast cancer MCF7 cells

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154039

ID:: 301154039

SRA Run Selector

Select item 30115403813.

RNA-Seq LNCaP + DHT

Organism:: Homo sapiens

Source name:: prostate cancer LNCaP cells

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154038

ID:: 301154038

SRA Run Selector

Select item 30115403714.

Organism:: Homo sapiens

Source name:: prostate cancer LNCaP cells

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154037

ID:: 301154037

SRA Run Selector

Select item 30115403615.

RNA-Seq HUVEC+TNF-α

Organism:: Homo sapiens

Source name:: primary HUVEC cells

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154036

ID:: 301154036

SRA Run Selector

Select item 30115403516.

Organism:: Homo sapiens

Source name:: primary HUVEC cells

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154035

ID:: 301154035

SRA Run Selector

Select item 30115403417.

RNA-Seq IMR90+IFN-γ 2hr

Organism:: Homo sapiens

Source name:: fetal lung fibroblast

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154034

ID:: 301154034

SRA Run Selector

Select item 30115403318.

RNA-Seq IMR90+IFN-γ 0hr

Organism:: Homo sapiens

Source name:: fetal lung fibroblast

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154033

ID:: 301154033

SRA Run Selector

Select item 30115403219.

RNA-Seq IMR90+TNF-α with CHX

Organism:: Homo sapiens

Source name:: fetal lung fibroblast

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154032

ID:: 301154032

SRA Run Selector

Select item 30115403120.

RNA-Seq IMR90 with CHX

Organism:: Homo sapiens

Source name:: fetal lung fibroblast

Platform:: GPL11154
Series:: GSE43070

Download data: BED

Sample

Accession:: GSM1154031

ID:: 301154031

SRA Run Selector

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