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Items: 15

1.

Direct ChIP-bisulfite sequencing reveals a role of H3K27me3 mediating aberrant hypermethylation of promoter CpG islands in cancer cells (ChIP-BS)

(Submitter supplied) The model describing that aberrant CpG island (CGI) methylation leads to transcription repression of tumor suppressor genes and thereby is implicated in tumor progression has been established in many cancers. However, recent studies indicated aberrantly hypermethylated genes in multiple cancers are already repressed in pre-cancerous tissues despite their promoters are hypomethylated. Here, we hypothesized that the occurrence of CGI promoter hypermethylation in cancers are associated with Polycomb-repressive complex and the associated H3K27me3 mark in pre-cancerous tissues. more...
Organism:
Homo sapiens
Type:
Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL11154
13 Samples
Download data: BED, TXT, WIG
Series
Accession:
GSE43094
ID:
200043094

PubMed Similar studies SRA Run Selector

2.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

3.

HeLa-H3K27me3-ChIP-BS-repeat

Organism:
Homo sapiens
Source name:
cervix adenocarcinoma clells
Platform:
GPL11154
Series:
GSE43094 GSE43096
Download data: BED, WIG
Sample
Accession:
GSM1056542
ID:
301056542

SRA Run Selector

4.

HeLa-H3K27me3-ChIP-BS

Organism:
Homo sapiens
Source name:
cervix adenocarcinoma clells
Platform:
GPL11154
Series:
GSE43094 GSE43096
Download data: BED, TXT, WIG
Sample
Accession:
GSM1056541
ID:
301056541

SRA Run Selector

5.

HeLa-H3K27me3-ChIP-repeat

Organism:
Homo sapiens
Source name:
cervix adenocarcinoma clells
Platform:
GPL11154
Series:
GSE43094 GSE43096
Download data: BED, WIG
Sample
Accession:
GSM1056540
ID:
301056540

SRA Run Selector

6.

HeLa-H3K27me3-ChIP

Organism:
Homo sapiens
Source name:
cervix adenocarcinoma clells
Platform:
GPL11154
Series:
GSE43094 GSE43096
Download data: BED, WIG
Sample
Accession:
GSM1056539
ID:
301056539

SRA Run Selector

7.

AGS-H3K27me3-ChIP-BS-repeat2

Organism:
Homo sapiens
Source name:
gastric adenocarcinoma cells
Platform:
GPL11154
Series:
GSE43094 GSE43096
Download data: BED, WIG
Sample
Accession:
GSM1056538
ID:
301056538

SRA Run Selector

8.

AGS-H3K27me3-ChIP-BS-repeat1

Organism:
Homo sapiens
Source name:
gastric adenocarcinoma cells
Platform:
GPL11154
Series:
GSE43094 GSE43096
Download data: BED, WIG
Sample
Accession:
GSM1056537
ID:
301056537

SRA Run Selector

9.

AGS-H3K27me3-ChIP-BS

Organism:
Homo sapiens
Source name:
gastric adenocarcinoma cells
Platform:
GPL11154
Series:
GSE43094 GSE43096
Download data: BED, TXT, WIG
Sample
Accession:
GSM1056536
ID:
301056536

SRA Run Selector

10.

AGS-H3K4me3-ChIP-BS-repeat

Organism:
Homo sapiens
Source name:
gastric adenocarcinoma cells
Platform:
GPL11154
Series:
GSE43094 GSE43096
Download data: BED, WIG
Sample
Accession:
GSM1056535
ID:
301056535

SRA Run Selector

11.

AGS-H3K4me3-ChIP-BS

Organism:
Homo sapiens
Source name:
gastric adenocarcinoma cells
Platform:
GPL11154
Series:
GSE43094 GSE43096
Download data: BED, TXT, WIG
Sample
Accession:
GSM1056534
ID:
301056534

SRA Run Selector

12.

BGC-823-H3K27me3-ChIP-BS

Organism:
Homo sapiens
Source name:
gastric adenocarcinoma cells
Platform:
GPL11154
Series:
GSE43094 GSE43096
Download data: BED, TXT, WIG
Sample
Accession:
GSM1056533
ID:
301056533

SRA Run Selector

13.

BGC-823-H3K4me3-ChIP-BS

Organism:
Homo sapiens
Source name:
gastric adenocarcinoma cells
Platform:
GPL11154
Series:
GSE43094 GSE43096
Download data: BED, TXT, WIG
Sample
Accession:
GSM1056532
ID:
301056532

SRA Run Selector

14.

YH-H3K27me3-ChIP-BS

Organism:
Homo sapiens
Source name:
lymphoblastoid cells
Platform:
GPL11154
Series:
GSE43094 GSE43096
Download data: BED, TXT, WIG
Sample
Accession:
GSM1056531
ID:
301056531

SRA Run Selector

15.

YH-H3K4me3-ChIP_BS

Organism:
Homo sapiens
Source name:
lymphoblastoid cells
Platform:
GPL11154
Series:
GSE43094 GSE43096
Download data: BED, TXT, WIG
Sample
Accession:
GSM1056530
ID:
301056530

SRA Run Selector

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