GSE43785[Accession] - GEO DataSets - NCBI

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Select item 2000437851.

Redefinition of Human Androgen Responsive Elements [ChIP-Seq, RNA-Seq]

(Submitter supplied) The androgen receptor (AR) mediates the action of androgens by binding to androgen-responsive elements (AREs) and subsequently regulating target genes involved in prostate carcinogenesis. The precise locations, true nature, and functional roles of AREs in human prostate cancer are still unknown. Here we redefine AREs by motif-resolution AR chromatin immunoprecipitation-exonuclease (ChIP-exo) assay in human prostate cancer cells and tumors. more...

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL11154
20 Samples

Download data: BED, TAGALIGN, TXT

Series

Accession:: GSE43785

ID:: 200043785

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 1000111542.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10400 Series
180082 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 3010712953.

malignant prostate tumor 4 (M4) [ChIP-exo replicate 2 ]

Organism:: Homo sapiens

Source name:: Prostate cancer patient b

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: BED

Sample

Accession:: GSM1071295

ID:: 301071295

SRA Run Selector

Select item 3010712944.

malignant prostate tumor 4 (M4) [ChIP-exo replicate 1 ]

Organism:: Homo sapiens

Source name:: Prostate cancer patient b

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: BED

Sample

Accession:: GSM1071294

ID:: 301071294

SRA Run Selector

Select item 3010712935.

malignant prostate tumor 3 (M3) [ChIP-exo replicate 2 ]

Organism:: Homo sapiens

Source name:: Prostate cancer patient a

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: BED

Sample

Accession:: GSM1071293

ID:: 301071293

SRA Run Selector

Select item 3010712926.

malignant prostate tumor 3 (M3) [ChIP-exo replicate 1 ]

Organism:: Homo sapiens

Source name:: Prostate cancer patient a

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: BED

Sample

Accession:: GSM1071292

ID:: 301071292

SRA Run Selector

Select item 3010712917.

malignant prostate tumor 2 (M2) [ChIP-exo replicate 2 ]

Organism:: Homo sapiens

Source name:: Prostate cancer patient d

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: BED

Sample

Accession:: GSM1071291

ID:: 301071291

SRA Run Selector

Select item 3010712908.

malignant prostate tumor 2 (M2) [ChIP-exo replicate 1 ]

Organism:: Homo sapiens

Source name:: Prostate cancer patient d

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: BED

Sample

Accession:: GSM1071290

ID:: 301071290

SRA Run Selector

Select item 3010712899.

malignant prostate tumor 1 (M1) [ChIP-exo replicate 2 ]

Organism:: Homo sapiens

Source name:: Prostate cancer patient c

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: BED

Sample

Accession:: GSM1071289

ID:: 301071289

SRA Run Selector

Select item 30107128810.

malignant prostate tumor 1 (M1) [ChIP-exo replicate 1 ]

Organism:: Homo sapiens

Source name:: Prostate cancer patient c

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: BED

Sample

Accession:: GSM1071288

ID:: 301071288

SRA Run Selector

Select item 30107128711.

non-malignant adjacent tissue 2 (N2) [ChIP-exo replicate 2 ]

Organism:: Homo sapiens

Source name:: Prostate cancer patient b

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: BED

Sample

Accession:: GSM1071287

ID:: 301071287

SRA Run Selector

Select item 30107128612.

non-malignant adjacent tissue 2 (N2) [ChIP-exo replicate 1 ]

Organism:: Homo sapiens

Source name:: Prostate cancer patient b

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: BED

Sample

Accession:: GSM1071286

ID:: 301071286

SRA Run Selector

Select item 30107128513.

non-malignant adjacent tissue 1 (N1) [ChIP-exo replicate 2 ]

Organism:: Homo sapiens

Source name:: Prostate cancer patient a

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: BED

Sample

Accession:: GSM1071285

ID:: 301071285

SRA Run Selector

Select item 30107128414.

non-malignant adjacent tissue 1 (N1) [ChIP-exo replicate 1 ]

Organism:: Homo sapiens

Source name:: Prostate cancer patient a

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: BED

Sample

Accession:: GSM1071284

ID:: 301071284

SRA Run Selector

Select item 30107128315.

LNCaP DHT treated [RNA-seq replicate 2 ]

Organism:: Homo sapiens

Source name:: LNCaP cells

Platform:: GPL11154
Series:: GSE43785 GSE43791

Sample

Accession:: GSM1071283

ID:: 301071283

SRA Run Selector

Select item 30107128216.

LNCaP DHT treated [RNA-seq replicate 1 ]

Organism:: Homo sapiens

Source name:: LNCaP cells

Platform:: GPL11154
Series:: GSE43785 GSE43791

Sample

Accession:: GSM1071282

ID:: 301071282

SRA Run Selector

Select item 30107128117.

LNCaP DHT treated [ChIP-exo replicate 2 ]

Organism:: Homo sapiens

Source name:: LNCaP cells

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: TAGALIGN

Sample

Accession:: GSM1071281

ID:: 301071281

SRA Run Selector

Select item 30107128018.

LNCaP DHT treated [ChIP-exo replicate 1 ]

Organism:: Homo sapiens

Source name:: LNCaP cells

Platform:: GPL11154
Series:: GSE43785 GSE43791

Download data: TAGALIGN

Sample

Accession:: GSM1071280

ID:: 301071280

SRA Run Selector

Select item 30107127919.

LNCaP control [RNA-seq replicate 2 ]

Organism:: Homo sapiens

Source name:: LNCaP cells

Platform:: GPL11154
Series:: GSE43785 GSE43791

Sample

Accession:: GSM1071279

ID:: 301071279

SRA Run Selector

Select item 30107127820.

LNCaP control [RNA-seq replicate 1 ]

Organism:: Homo sapiens

Source name:: LNCaP cells

Platform:: GPL11154
Series:: GSE43785 GSE43791

Sample

Accession:: GSM1071278

ID:: 301071278

SRA Run Selector

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