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Items: 20

1.

A Stable Transcription Factor Complex Nucleated by Dimeric AML1-ETO Controls Leukaemogenesis

(Submitter supplied) AML1-ETO, a fusion protein generated by the t(8;21) translocation in acute myeloid leukemia, is a transcription factor implicated in both gene repression and activation. We now show that, in leukemic cells, AML1-ETO resides in and functions through a stable protein complex (AETFC) that contains several hematopoietic transcription factors and cofactors. In conjunction with biochemical and leukemia pathological studies, the ChIP-seq and RNA-seq analyses of the AETFC components in leukemic cells reveal that these components stabilize the complex through multivalent interactions, provide multiple DNA-binding domains for diverse target genes, colocalize genome-wide, cooperatively regulate gene expression, and contribute to leukemogenesis.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL10999 GPL11154
17 Samples
Download data: TXT, WIG
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

Illumina Genome Analyzer IIx (Homo sapiens)

Platform
Accession:
GPL10999
ID:
100010999
4.

Input DNA for LMO2 ChIP-seq

Organism:
Homo sapiens
Source name:
Input DNA for LMO2 ChIP-seq
Platform:
GPL10999
Series:
GSE43834
Download data: WIG
Sample
Accession:
GSM1082312
ID:
301082312
5.

LMO2 ChIP-seq

Organism:
Homo sapiens
Source name:
LMO2 ChIP-seq
Platform:
GPL10999
Series:
GSE43834
Download data: TXT, WIG
Sample
Accession:
GSM1082311
ID:
301082311
6.

Input DNA for HEB and E2A ChIP-seq

Organism:
Homo sapiens
Source name:
Input DNA for HEB and E2A ChIP-seq
Platform:
GPL10999
Series:
GSE43834
Download data: WIG
Sample
Accession:
GSM1082310
ID:
301082310
7.

E2A ChIP-seq

Organism:
Homo sapiens
Source name:
E2A ChIP-seq
Platform:
GPL10999
Series:
GSE43834
Download data: TXT, WIG
Sample
Accession:
GSM1082309
ID:
301082309
8.

HEB ChIP-seq

Organism:
Homo sapiens
Source name:
HEB ChIP-seq
Platform:
GPL10999
Series:
GSE43834
Download data: TXT, WIG
Sample
Accession:
GSM1082308
ID:
301082308
9.

Input DNA for AML1-ETO ChIP-seq

Organism:
Homo sapiens
Source name:
Input DNA for AML1-ETO ChIP-seq
Platform:
GPL10999
Series:
GSE43834
Download data: WIG
Sample
Accession:
GSM1082307
ID:
301082307
10.

AML1-ETO ChIP-seq

Organism:
Homo sapiens
Source name:
AML1-ETO ChIP-seq
Platform:
GPL10999
Series:
GSE43834
Download data: TXT, WIG
Sample
Accession:
GSM1082306
ID:
301082306
11.

shControl for shHEB+shE2A

Organism:
Homo sapiens
Source name:
Kasumi-1 cells
Platform:
GPL11154
Series:
GSE43834
Download data: TXT
Sample
Accession:
GSM1071861
ID:
301071861
12.

shHEB+shE2A

Organism:
Homo sapiens
Source name:
Kasumi-1 cells
Platform:
GPL11154
Series:
GSE43834
Download data: TXT
Sample
Accession:
GSM1071860
ID:
301071860
13.

shControl for shHEB

Organism:
Homo sapiens
Source name:
Kasumi-1 cells
Platform:
GPL11154
Series:
GSE43834
Download data: TXT
Sample
Accession:
GSM1071859
ID:
301071859
14.

shHEB

Organism:
Homo sapiens
Source name:
Kasumi-1 cells
Platform:
GPL11154
Series:
GSE43834
Download data: TXT
Sample
Accession:
GSM1071858
ID:
301071858
15.

shControl for shAML1-ETO, shE2A, shLYL1, shLDB1 and shLMO2

Organism:
Homo sapiens
Source name:
Kasumi-1 cells
Platform:
GPL11154
Series:
GSE43834
Download data: TXT
Sample
Accession:
GSM1071857
ID:
301071857
16.

shLMO2

Organism:
Homo sapiens
Source name:
Kasumi-1 cells
Platform:
GPL11154
Series:
GSE43834
Download data: TXT
Sample
Accession:
GSM1071856
ID:
301071856
17.

shLDB1

Organism:
Homo sapiens
Source name:
Kasumi-1 cells
Platform:
GPL11154
Series:
GSE43834
Download data: TXT
Sample
Accession:
GSM1071855
ID:
301071855
18.

shLYL1

Organism:
Homo sapiens
Source name:
Kasumi-1 cells
Platform:
GPL11154
Series:
GSE43834
Download data: TXT
Sample
Accession:
GSM1071854
ID:
301071854
19.

shE2A

Organism:
Homo sapiens
Source name:
Kasumi-1 cells
Platform:
GPL11154
Series:
GSE43834
Download data: TXT
Sample
Accession:
GSM1071853
ID:
301071853
20.

shAML1-ETO

Organism:
Homo sapiens
Source name:
Kasumi-1 cells
Platform:
GPL11154
Series:
GSE43834
Download data: TXT
Sample
Accession:
GSM1071852
ID:
301071852
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Supplemental Content

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