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Items: 20

1.

Cohesin and CTCF Differentially Affect the Chromatin Architecture and Gene Expression in Human Cells

(Submitter supplied) Recent studies of genome-wide chromatin interactions have revealed that the human genome is partitioned into many self-associating topological domains. The boundary sequences are enriched for binding sites of CTCF and the cohesin complex, implicating these two factors in the establishment or maintenance of topological domains. To determine the role of cohesin and CTCF in higher order chromatin architecture in human cells, we proteolytically cleaved the cohesin complex from interphase chromatin and examined changes in chromosomal organization as well as transcriptome. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other
Platform:
GPL11154
18 Samples
Download data: BW, RPKM, TXT
Series
Accession:
GSE44267
ID:
200044267

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

3.

Input ChIP-seq, RAD21cv HEK293, TEV Treated

Organism:
Homo sapiens
Source name:
Input ChIP-seq, RAD21cv HEK293, TEV Treated
Platform:
GPL11154
Series:
GSE44267
Download data: BW
Sample
Accession:
GSM1081543
ID:
301081543

SRA Run Selector

4.

Smc3 ChIP-seq, RAD21cv HEK293, TEV Treated

Organism:
Homo sapiens
Source name:
Smc3 ChIP-seq, RAD21cv HEK293, TEV Treated
Platform:
GPL11154
Series:
GSE44267
Download data: BW
Sample
Accession:
GSM1081542
ID:
301081542

SRA Run Selector

5.

mRNA-seq, HEK293 siRNA CTCF, replicate two

Organism:
Homo sapiens
Source name:
mRNA-seq, HEK293 siRNA CTCF
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081541
ID:
301081541

SRA Run Selector

6.

mRNA-seq, HEK293 siRNA CTCF, replicate one

Organism:
Homo sapiens
Source name:
mRNA-seq, HEK293 siRNA CTCF
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081540
ID:
301081540

SRA Run Selector

7.

mRNA-seq, HEK293 siRNA Control, replicate two

Organism:
Homo sapiens
Source name:
mRNA-seq, HEK293 siRNA Control
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081539
ID:
301081539

SRA Run Selector

8.

mRNA-seq, HEK293 siRNA Control, replicate one

Organism:
Homo sapiens
Source name:
mRNA-seq, HEK293 siRNA Control
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081538
ID:
301081538

SRA Run Selector

9.

mRNA-seq, RAD21cv HEK293, HRV treated, replicate two

Organism:
Homo sapiens
Source name:
mRNA-seq, RAD21cv HEK293, HRV treated
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081537
ID:
301081537

SRA Run Selector

10.

mRNA-seq, RAD21cv HEK293, HRV treated, replicate one

Organism:
Homo sapiens
Source name:
mRNA-seq, RAD21cv HEK293, HRV treated
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081536
ID:
301081536

SRA Run Selector

11.

mRNA-seq, RAD21cv HEK293, TEV treated, replicate two

Organism:
Homo sapiens
Source name:
mRNA-seq, RAD21cv HEK293, TEV treated
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081535
ID:
301081535

SRA Run Selector

12.

mRNA-seq, RAD21cv HEK293, TEV treated, replicate one

Organism:
Homo sapiens
Source name:
mRNA-seq, RAD21cv HEK293, TEV treated
Platform:
GPL11154
Series:
GSE44267
Download data: BW, RPKM
Sample
Accession:
GSM1081534
ID:
301081534

SRA Run Selector

13.

Hi-C, HEK293 siRNA CTCF, replicate two

Organism:
Homo sapiens
Source name:
Hi-C, HEK293 siRNA CTCF
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081533
ID:
301081533

SRA Run Selector

14.

Hi-C, HEK293 siRNA CTCF, replicate one

Organism:
Homo sapiens
Source name:
Hi-C, HEK293 siRNA CTCF
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081532
ID:
301081532

SRA Run Selector

15.

Hi-C, HEK293 siRNA Control, replicate two

Organism:
Homo sapiens
Source name:
Hi-C, HEK293 siRNA Control
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081531
ID:
301081531

SRA Run Selector

16.

Hi-C, HEK293 siRNA Control, replicate one

Organism:
Homo sapiens
Source name:
Hi-C, HEK293 siRNA Control
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081530
ID:
301081530

SRA Run Selector

17.

Hi-C, RAD21cv HEK293, HRV treated, replicate two

Organism:
Homo sapiens
Source name:
Hi-C, RAD21cv HEK293, HRV treated
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081529
ID:
301081529

SRA Run Selector

18.

Hi-C, RAD21cv HEK293, HRV treated, replicate one

Organism:
Homo sapiens
Source name:
Hi-C, RAD21cv HEK293, HRV treated
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081528
ID:
301081528

SRA Run Selector

19.

Hi-C, RAD21cv HEK293, TEV treated, replicate two

Organism:
Homo sapiens
Source name:
Hi-C, RAD21cv HEK293, TEV treated
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081527
ID:
301081527

SRA Run Selector

20.

Hi-C, RAD21cv HEK293, TEV treated, replicate one

Organism:
Homo sapiens
Source name:
Hi-C, RAD21cv HEK293, TEV treated
Platform:
GPL11154
Series:
GSE44267
Download data: TXT
Sample
Accession:
GSM1081526
ID:
301081526

SRA Run Selector

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