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Items: 10

1.

A Probabilistic Model of Transcription Dynamics applied to Estrogen Signalling in Breast Cancer Cells

(Submitter supplied) Gene transcription mediated by RNA polymerase II (pol-II) is a key step in gene expression. The dynamics of pol-II moving along the transcribed region influences the rate and timing of gene expression. In this work we present a probabilistic model of transcription dynamics which is fitted to pol-II occupancy time course data measured using ChIP-Seq. The model can be used to estimate transcription speed and to infer the temporal pol-II activity profile at the gene promoter. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL11154
8 Samples
Download data: BED
Series
Accession:
GSE44800
ID:
200044800

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

3.

MCF7_No_Treat_PolII

Organism:
Homo sapiens
Source name:
Breast cancer cells
Platform:
GPL11154
Series:
GSE44800
Download data: BED
Sample
Accession:
GSM1091921
ID:
301091921

SRA Run Selector

4.

MCF7_E2_320min_PolII_rep

Organism:
Homo sapiens
Source name:
Breast cancer cells
Platform:
GPL11154
Series:
GSE44800
Download data: BED
Sample
Accession:
GSM1091920
ID:
301091920

SRA Run Selector

5.

MCF7_E2_160min_PolII_rep

Organism:
Homo sapiens
Source name:
Breast cancer cells
Platform:
GPL11154
Series:
GSE44800
Download data: BED
Sample
Accession:
GSM1091919
ID:
301091919

SRA Run Selector

6.

MCF7_E2_80min_PolII_rep

Organism:
Homo sapiens
Source name:
Breast cancer cells
Platform:
GPL11154
Series:
GSE44800
Download data: BED
Sample
Accession:
GSM1091918
ID:
301091918

SRA Run Selector

7.

MCF7_E2_40min_PolII_rep

Organism:
Homo sapiens
Source name:
Breast cancer cells
Platform:
GPL11154
Series:
GSE44800
Download data: BED
Sample
Accession:
GSM1091917
ID:
301091917

SRA Run Selector

8.

MCF7_E2_20min_PolII_rep

Organism:
Homo sapiens
Source name:
Breast cancer cells
Platform:
GPL11154
Series:
GSE44800
Download data: BED
Sample
Accession:
GSM1091916
ID:
301091916

SRA Run Selector

9.

MCF7_E2_10min_PolII_rep

Organism:
Homo sapiens
Source name:
Breast cancer cells
Platform:
GPL11154
Series:
GSE44800
Download data: BED
Sample
Accession:
GSM1091915
ID:
301091915

SRA Run Selector

10.

MCF7_E2_5min_PolII_rep

Organism:
Homo sapiens
Source name:
Breast cancer cells
Platform:
GPL11154
Series:
GSE44800
Download data: BED
Sample
Accession:
GSM1091914
ID:
301091914

SRA Run Selector

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db=gds|term=GSE44800[Accession]|query=1|qty=2|blobid=MCID_6643f5cf5f31ac49119a94ea|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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