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Items: 10

1.

Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types (RNA-seq)

(Submitter supplied) We report the design and implementation of a "breakpoint analysis" pipeline to discover novel gene fusions by tell-tale transcript level or genomic DNA copy number transitions occurring within genes. We use this method to prioritize candidate rearrangements from high density array CGH datasets as well as exon-resolution expression microarrays. We mine both publicly available data as well as datasets generated in our laboratory. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL9115 GPL11154
7 Samples
Download data: TXT
Series
Accession:
GSE45133
ID:
200045133

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

3.

Illumina Genome Analyzer II (Homo sapiens)

Organism:
Homo sapiens
753 Series
6113 Samples
Download data
Platform
Accession:
GPL9115
ID:
100009115

4.

Multi_C

Organism:
Homo sapiens
Source name:
Combined human cancer cell lines (CHL-1, DKMG, JURKAT)
Platform:
GPL11154
Series:
GSE45133 GSE45137
Download data
Sample
Accession:
GSM1097789
ID:
301097789

SRA Run Selector

5.

Multi_B

Organism:
Homo sapiens
Source name:
Combined cancer cell lines (SUPT7, ONS76, SH-4)
Platform:
GPL11154
Series:
GSE45133 GSE45137
Download data
Sample
Accession:
GSM1097788
ID:
301097788

SRA Run Selector

6.

Multi_A

Organism:
Homo sapiens
Source name:
Combined cancer cell lines (A172, A431, D538MG)
Platform:
GPL11154
Series:
GSE45133 GSE45137
Download data
Sample
Accession:
GSM1097787
ID:
301097787

SRA Run Selector

7.

SUPT13

Organism:
Homo sapiens
Source name:
T-ALL cell line
Platform:
GPL9115
Series:
GSE45133 GSE45137
Download data
Sample
Accession:
GSM1097793
ID:
301097793

SRA Run Selector

8.

BT-549

Organism:
Homo sapiens
Source name:
Breast cancer cell line
Platform:
GPL9115
Series:
GSE45133 GSE45137
Download data
Sample
Accession:
GSM1097792
ID:
301097792

SRA Run Selector

9.

HCC1954

Organism:
Homo sapiens
Source name:
Breast cancer cell line
Platform:
GPL9115
Series:
GSE45133 GSE45137
Download data
Sample
Accession:
GSM1097791
ID:
301097791

SRA Run Selector

10.

PL5

Organism:
Homo sapiens
Source name:
Pancreatic cancer cell line
Platform:
GPL9115
Series:
GSE45133 GSE45137
Download data
Sample
Accession:
GSM1097790
ID:
301097790

SRA Run Selector

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