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Items: 5

1.

Using RNA-Seq to create sample-specific proteomic databases that enable mass spectrometric discovery of splice junction peptides

(Submitter supplied) Many new alternative splice forms have been detected at the transcript level using next generation sequencing (NGS) methods, especially RNA-Seq, but it is not known how many of these transcripts are being translated. Leveraging the unprecedented capabilities of NGS, we collected RNA-Seq and proteomics data from the same cell population (Jurkat cells) and created a bioinformatics pipeline that builds customized databases for the discovery of novel splice-junction peptides. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL11154
3 Samples
Download data: BED, TXT
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

Jurkat Cells 236

Organism:
Homo sapiens
Source name:
immortalized T-cell line
Platform:
GPL11154
Series:
GSE45428
Download data
Sample
Accession:
GSM1104131
ID:
301104131
4.

Jurkat Cells 245

Organism:
Homo sapiens
Source name:
immortalized T-cell line
Platform:
GPL11154
Series:
GSE45428
Download data
Sample
Accession:
GSM1104130
ID:
301104130
5.

Jurkat Cells 216

Organism:
Homo sapiens
Source name:
immortalized T-cell line
Platform:
GPL11154
Series:
GSE45428
Download data
Sample
Accession:
GSM1104129
ID:
301104129
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Supplemental Content

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