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Items: 1 to 20 of 28

1.

Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

(Submitter supplied) We present an approach for globally monitoring RNA structure in native conditions in vivo with single nucleotide precision. This method is based on in vivo modification with dimethyl sulfate (DMS), which reacts with unpaired adenine and cytosine residues9, followed by deep sequencing to monitor modifications. Our data from yeast and mammalian cells are in excellent agreement with known mRNA structures and with the high-resolution crystal structure of the Saccharomyces cerevisiae ribosome10. more...
Organism:
Homo sapiens; Saccharomyces cerevisiae
Type:
Other
Platforms:
GPL13821 GPL11154
25 Samples
Download data: TXT, WIG
Series
Accession:
GSE45803
ID:
200045803

SRA Run Selector

2.

Illumina HiSeq 2000 (Saccharomyces cerevisiae)

Organism:
Saccharomyces cerevisiae
427 Series
6087 Samples
Download data
Platform
Accession:
GPL13821
ID:
100013821

3.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

4.

FibroblastDenatured

Organism:
Homo sapiens
Source name:
Human fibroblasts
Platform:
GPL11154
Series:
GSE45803
Download data: TXT
Sample
Accession:
GSM1297508
ID:
301297508

SRA Run Selector

5.

FibroblastVitro

Organism:
Homo sapiens
Source name:
Human fibroblasts
Platform:
GPL11154
Series:
GSE45803
Download data: TXT
Sample
Accession:
GSM1297507
ID:
301297507

SRA Run Selector

6.

FibroblastVivo

Organism:
Homo sapiens
Source name:
Human fibroblasts
Platform:
GPL11154
Series:
GSE45803
Download data: TXT
Sample
Accession:
GSM1297506
ID:
301297506

SRA Run Selector

7.

k562vitro

Organism:
Homo sapiens
Source name:
Human bone marrow, chronic myelogenous leukemia
Platform:
GPL11154
Series:
GSE45803
Download data: TXT
Sample
Accession:
GSM1297496
ID:
301297496

SRA Run Selector

8.

K562denatured

Organism:
Homo sapiens
Source name:
Human bone marrow, chronic myelogenous leukemia
Platform:
GPL11154
Series:
GSE45803
Download data: TXT
Sample
Accession:
GSM1297495
ID:
301297495

SRA Run Selector

9.

K562vivo2_dms400

Organism:
Homo sapiens
Source name:
Human bone marrow, chronic myelogenous leukemia
Platform:
GPL11154
Series:
GSE45803
Download data: TXT
Sample
Accession:
GSM1297494
ID:
301297494

SRA Run Selector

10.

K562vivo1_dms300

Organism:
Homo sapiens
Source name:
Human bone marrow, chronic myelogenous leukemia
Platform:
GPL11154
Series:
GSE45803
Download data: TXT
Sample
Accession:
GSM1297493
ID:
301297493

SRA Run Selector

11.

Yeast10CDMS

Organism:
Saccharomyces cerevisiae
Source name:
S288C
Platform:
GPL13821
Series:
GSE45803
Download data: WIG
Sample
Accession:
GSM1297510
ID:
301297510

SRA Run Selector

12.

YeastNoATPDMS

Organism:
Saccharomyces cerevisiae
Source name:
S288C
Platform:
GPL13821
Series:
GSE45803
Download data: WIG
Sample
Accession:
GSM1297509
ID:
301297509

SRA Run Selector

13.

Vitro 75C

Organism:
Saccharomyces cerevisiae
Source name:
in vitro 75C
Platform:
GPL13821
Series:
GSE45803
Download data
Sample
Accession:
GSM1115764
ID:
301115764

SRA Run Selector

14.

Vitro 60C

Organism:
Saccharomyces cerevisiae
Source name:
in vitro 60C
Platform:
GPL13821
Series:
GSE45803
Download data
Sample
Accession:
GSM1115763
ID:
301115763

SRA Run Selector

15.

Vitro 45C

Organism:
Saccharomyces cerevisiae
Source name:
in vitro 45C
Platform:
GPL13821
Series:
GSE45803
Download data
Sample
Accession:
GSM1115762
ID:
301115762

SRA Run Selector

16.

Vitro 30C 4%DMS, 5min

Organism:
Saccharomyces cerevisiae
Source name:
in vitro 30C 4%DMS, 5min
Platform:
GPL13821
Series:
GSE45803
Download data
Sample
Accession:
GSM1115761
ID:
301115761

SRA Run Selector

17.

Vitro 30C 2.5%DMS, 5min

Organism:
Saccharomyces cerevisiae
Source name:
in vitro 30C 2.5%DMS, 5min
Platform:
GPL13821
Series:
GSE45803
Download data
Sample
Accession:
GSM1115760
ID:
301115760

SRA Run Selector

18.

Vitro 30C 2.5%DMS, 3min

Organism:
Saccharomyces cerevisiae
Source name:
in vitro 30C 2.5%DMS, 3min
Platform:
GPL13821
Series:
GSE45803
Download data
Sample
Accession:
GSM1115759
ID:
301115759

SRA Run Selector

19.

Vitro 30C rep3

Organism:
Saccharomyces cerevisiae
Source name:
in vitro 30C
Platform:
GPL13821
Series:
GSE45803
Download data
Sample
Accession:
GSM1115758
ID:
301115758

SRA Run Selector

20.

Vitro 30C rep2

Organism:
Saccharomyces cerevisiae
Source name:
in vitro 30C
Platform:
GPL13821
Series:
GSE45803
Download data
Sample
Accession:
GSM1115757
ID:
301115757

SRA Run Selector

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