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Items: 14

1.

Functional Importance of eRNAs for Estrogen-dependent Gene Transcriptional Activation

(Submitter supplied) The functional importance of gene enhancers in regulated gene expression is well established. In addition to widespread transcription of long non-coding RNA (ncRNA) transcripts in mammalian cells, bidirectional ncRNAs referred to as eRNAs are present on enhancers. However, it has remained unclear whether these eRNAs are functional, or merely a reflection of enhancer activation. Here, we report that 17 β-estradiol (E2)-bound estrogen receptor alpha (ERα) on enhancers causes a global increase in eRNA transcription on enhancers adjacent to E2 upregulated coding genes. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing
Platforms:
GPL10999 GPL11154
11 Samples
Download data: BIGWIG
2.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
3.

Illumina Genome Analyzer IIx (Homo sapiens)

Platform
Accession:
GPL10999
ID:
100010999
4.

H3K4me1_ChIPSeq_E2

Organism:
Homo sapiens
Source name:
MCF7
Platform:
GPL10999
Series:
GSE45822
Download data: BIGWIG
Sample
Accession:
GSM1115994
ID:
301115994
5.

H3K27ac_ChIPSeq_EtOH

Organism:
Homo sapiens
Source name:
MCF7
Platform:
GPL10999
Series:
GSE45822
Download data: BIGWIG
Sample
Accession:
GSM1115993
ID:
301115993
6.

H3K27ac_ChIPSeq_E2

Organism:
Homo sapiens
Source name:
MCF7
Platform:
GPL10999
Series:
GSE45822
Download data: BIGWIG
Sample
Accession:
GSM1115992
ID:
301115992
7.

ERa_ChIPSeq_repeat2

Organism:
Homo sapiens
Source name:
MCF7
Platform:
GPL10999
Series:
GSE45822
Download data: BIGWIG
Sample
Accession:
GSM1115991
ID:
301115991
8.

ERa_ChIPSeq_repeat1

Organism:
Homo sapiens
Source name:
MCF7
Platform:
GPL10999
Series:
GSE45822
Download data: BIGWIG
Sample
Accession:
GSM1115990
ID:
301115990
9.

GROSeq_siSMC3_EtOH

Organism:
Homo sapiens
Source name:
MCF7
Platform:
GPL11154
Series:
GSE45822
Download data: BIGWIG
Sample
Accession:
GSM1116000
ID:
301116000
10.

GROSeq_siSMC3_E2

Organism:
Homo sapiens
Source name:
MCF7
Platform:
GPL11154
Series:
GSE45822
Download data: BIGWIG
Sample
Accession:
GSM1115999
ID:
301115999
11.

GROSeq_EtOH_repeat2

Organism:
Homo sapiens
Source name:
MCF7
Platform:
GPL11154
Series:
GSE45822
Download data: BIGWIG
Sample
Accession:
GSM1115998
ID:
301115998
12.

GROSeq_EtOH_repeat1

Organism:
Homo sapiens
Source name:
MCF7
Platform:
GPL11154
Series:
GSE45822
Download data: BIGWIG
Sample
Accession:
GSM1115997
ID:
301115997
13.

GROSeq_E2_repeat2

Organism:
Homo sapiens
Source name:
MCF7
Platform:
GPL11154
Series:
GSE45822
Download data: BIGWIG
Sample
Accession:
GSM1115996
ID:
301115996
14.

GROSeq_E2_repeat1

Organism:
Homo sapiens
Source name:
MCF7
Platform:
GPL11154
Series:
GSE45822
Download data: BIGWIG
Sample
Accession:
GSM1115995
ID:
301115995
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Supplemental Content

db=gds|term=GSE45822[Accession]|query=1|qty=2|blobid=MCID_6652fe7b6c05354989868491|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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