GSE46611[Accession] - GEO DataSets - NCBI

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Items: 9

Select item 2000466111.

MicroRNA Target Site Identification by Integrating Sequence and Binding Information

(Submitter supplied) High-throughput sequencing has opened numerous possibilities for the identification of regulatory RNA-binding events. Cross-linking and immunoprecipitation of Argonaute protein members can pinpoint microRNA target sites within tens of bases, but leaves the identity of the microRNA unresolved. A flexible computational framework that integrates sequence with cross-linking features reliably identifies the microRNA family involved in each binding event, considerably outperforms sequence-only approaches, and quantifies the prevalence of noncanonical binding modes.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL11154 GPL10999
6 Samples

Download data: BED, TXT

Series

Accession:: GSE46611

ID:: 200046611

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 1000111542.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10400 Series
180082 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 1000109993.

Illumina Genome Analyzer IIx (Homo sapiens)

Organism:: Homo sapiens

1096 Series
9927 Samples

Platform

Accession:: GPL10999

ID:: 100010999

Select item 3011332514.

Organism:: Homo sapiens

Source name:: LCL cell line established using EBV B95-8 BACmid lacking ebv-mir-BHRF1-3 (D3)

Platform:: GPL11154
Series:: GSE46611

Sample

Accession:: GSM1133251

ID:: 301133251

SRA Run Selector

Select item 3011332505.

Organism:: Homo sapiens

Source name:: LCL cell line established using EBV B95-8 BACmid lacking ebv-mir-BHRF1-2 (D2)

Platform:: GPL11154
Series:: GSE46611

Sample

Accession:: GSM1133250

ID:: 301133250

SRA Run Selector

Select item 3011332496.

Organism:: Homo sapiens

Source name:: LCL cell line established using EBV B95-8 BACmid lacking ebv-mir-BHRF1-1 (D1), RNA-seq biological replicate #2

Platform:: GPL11154
Series:: GSE46611

Sample

Accession:: GSM1133249

ID:: 301133249

SRA Run Selector

Select item 3011332487.

Organism:: Homo sapiens

Source name:: LCL cell line established using EBV B95-8 BACmid lacking ebv-mir-BHRF1-1 (D1), RNA-seq biological replicate #1

Platform:: GPL11154
Series:: GSE46611

Sample

Accession:: GSM1133248

ID:: 301133248

SRA Run Selector

Select item 3011332478.

Organism:: Homo sapiens

Source name:: LCL cell line established using EBV B95-8 BACmid

Platform:: GPL11154
Series:: GSE46611

Sample

Accession:: GSM1133247

ID:: 301133247

SRA Run Selector

Select item 3011332529.

Organism:: Homo sapiens

Source name:: LCL cell line established using EBV B95-8 BACmid lacking ebv-mir-BHRF1-2 (D2)

Platform:: GPL10999
Series:: GSE46611

Download data: BED

Sample

Accession:: GSM1133252

ID:: 301133252

SRA Run Selector

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