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Items: 15

1.

Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition [RNA-Seq]

(Submitter supplied) Although the function of DNA methylation in gene promoter regions is well established in transcriptional repression, the function of the evolutionarily conserved widespread distribution of DNA methylation in gene body regions remains incompletely understood. Here, we show that DNA methylation is enriched in included alternatively spliced exons (ASEs) and inhibiting DNA methylation results in aberrant splicing of ASEs. more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL9115 GPL11154
12 Samples
Download data: BED
Series
Accession:
GSE47488
ID:
200047488

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

3.

Illumina Genome Analyzer II (Homo sapiens)

Organism:
Homo sapiens
753 Series
6113 Samples
Download data
Platform
Accession:
GPL9115
ID:
100009115

4.

IMR90_shMeCP2_GA2349_RNAseq

Organism:
Homo sapiens
Source name:
IMR90 cells infected with the shRNA-MeCP2 construct
Platform:
GPL9115
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151053
ID:
301151053

SRA Run Selector

5.

IMR90_shLuc_GA2348_RNAseq

Organism:
Homo sapiens
Source name:
IMR90 cells infected with the negative control shRNA-luciferase (shLuc) construct
Platform:
GPL9115
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151052
ID:
301151052

SRA Run Selector

6.

HCT116_DKO_GA2067_RNAseq

Organism:
Homo sapiens
Source name:
HCT116 cells expressing hypomorphic DNMT1 and lack DNMT3b (HCT116-DKO)
Platform:
GPL9115
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151051
ID:
301151051

SRA Run Selector

7.

HCT116_GA2066_RNAseq

Organism:
Homo sapiens
Source name:
HCT116 cells
Platform:
GPL9115
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151050
ID:
301151050

SRA Run Selector

8.

IMR90_Aza_GA2065_RNAseq

Organism:
Homo sapiens
Source name:
IMR90 cells treated with 5azadC
Platform:
GPL9115
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151049
ID:
301151049

SRA Run Selector

9.

IMR90_GA2064_RNAseq

Organism:
Homo sapiens
Source name:
IMR90 cells
Platform:
GPL9115
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151048
ID:
301151048

SRA Run Selector

10.

HCT116_6hr_TSA_GA3816_RNAseq

Organism:
Homo sapiens
Source name:
HCT116 cells treated with trichostatin-A (TSA) for 6 hours
Platform:
GPL11154
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151059
ID:
301151059

SRA Run Selector

11.

HCT116_GA3814_RNAseq

Organism:
Homo sapiens
Source name:
HCT116 cells
Platform:
GPL11154
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151058
ID:
301151058

SRA Run Selector

12.

IMR90_6hr_TSA_GA3263_RNAseq

Organism:
Homo sapiens
Source name:
IMR90 cells treated with trichostatin-A (TSA) for 6 hours
Platform:
GPL11154
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151057
ID:
301151057

SRA Run Selector

13.

IMR90_GA3259_RNAseq

Organism:
Homo sapiens
Source name:
IMR90 cells
Platform:
GPL11154
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151056
ID:
301151056

SRA Run Selector

14.

HCT116_shMeCP2_GA3256_RNAseq

Organism:
Homo sapiens
Source name:
HCT116 cells infected with the shRNA-MeCP2 construct
Platform:
GPL11154
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151055
ID:
301151055

SRA Run Selector

15.

HCT116_shLuc_GA3255_RNAseq

Organism:
Homo sapiens
Source name:
HCT116 cells infected with the negative control shRNA-luciferase (shLuc) construct
Platform:
GPL11154
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151054
ID:
301151054

SRA Run Selector

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