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Items: 1 to 20 of 25

1.

Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL9115 GPL11154
22 Samples
Download data: BED, BEDGRAPH
Series
Accession:
GSE47678
ID:
200047678

PubMed Full text in PMC Similar studies

2.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

3.

Illumina Genome Analyzer II (Homo sapiens)

Organism:
Homo sapiens
753 Series
6113 Samples
Download data
Platform
Accession:
GPL9115
ID:
100009115

4.

HCT116_Input_GA2462_ChIPseq

Organism:
Homo sapiens
Source name:
HCT116_Input
Platform:
GPL9115
Series:
GSE47677 GSE47678
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1154511
ID:
301154511

SRA Run Selector

5.

HCT116_MeCP2_GA1576_ChIPseq

Organism:
Homo sapiens
Source name:
HCT116_MeCP2
Platform:
GPL9115
Series:
GSE47677 GSE47678
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1154509
ID:
301154509

SRA Run Selector

6.

IMR90_Input_GA2460_replicate_ChIPseq

Organism:
Homo sapiens
Source name:
IMR90_Input
Platform:
GPL9115
Series:
GSE47677 GSE47678
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1154508
ID:
301154508

SRA Run Selector

7.

IMR90_Input_GA2460_ChIPseq

Organism:
Homo sapiens
Source name:
IMR90_Input
Platform:
GPL9115
Series:
GSE47677 GSE47678
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1154507
ID:
301154507

SRA Run Selector

8.

IMR90_MeCP2_GA1580_replicate_ChIPseq

Organism:
Homo sapiens
Source name:
IMR90_MeCP2
Platform:
GPL9115
Series:
GSE47677 GSE47678
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1154506
ID:
301154506

SRA Run Selector

9.

IMR90_MeCP2_GA1580_ChIPseq

Organism:
Homo sapiens
Source name:
IMR90_MeCP2
Platform:
GPL9115
Series:
GSE47677 GSE47678
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1154505
ID:
301154505

SRA Run Selector

10.

IMR90_MeCP2_GA1110_ChIPseq

Organism:
Homo sapiens
Source name:
IMR90_MeCP2
Platform:
GPL9115
Series:
GSE47677 GSE47678
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1154504
ID:
301154504

SRA Run Selector

11.

IMR90_shMeCP2_GA2349_RNAseq

Organism:
Homo sapiens
Source name:
IMR90 cells infected with the shRNA-MeCP2 construct
Platform:
GPL9115
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151053
ID:
301151053

SRA Run Selector

12.

IMR90_shLuc_GA2348_RNAseq

Organism:
Homo sapiens
Source name:
IMR90 cells infected with the negative control shRNA-luciferase (shLuc) construct
Platform:
GPL9115
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151052
ID:
301151052

SRA Run Selector

13.

HCT116_DKO_GA2067_RNAseq

Organism:
Homo sapiens
Source name:
HCT116 cells expressing hypomorphic DNMT1 and lack DNMT3b (HCT116-DKO)
Platform:
GPL9115
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151051
ID:
301151051

SRA Run Selector

14.

HCT116_GA2066_RNAseq

Organism:
Homo sapiens
Source name:
HCT116 cells
Platform:
GPL9115
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151050
ID:
301151050

SRA Run Selector

15.

IMR90_Aza_GA2065_RNAseq

Organism:
Homo sapiens
Source name:
IMR90 cells treated with 5azadC
Platform:
GPL9115
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151049
ID:
301151049

SRA Run Selector

16.

IMR90_GA2064_RNAseq

Organism:
Homo sapiens
Source name:
IMR90 cells
Platform:
GPL9115
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151048
ID:
301151048

SRA Run Selector

17.

HCT116_ser2p_PolII_GA3249_ChIPseq

Organism:
Homo sapiens
Source name:
HCT116_ser2p
Platform:
GPL11154
Series:
GSE47677 GSE47678
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1154513
ID:
301154513

SRA Run Selector

18.

HCT116_Input_GA3250_ChIPseq

Organism:
Homo sapiens
Source name:
HCT116_Input
Platform:
GPL11154
Series:
GSE47677 GSE47678
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1154512
ID:
301154512

SRA Run Selector

19.

HCT116_MeCP2_GA3247_ChIPseq

Organism:
Homo sapiens
Source name:
HCT116_MeCP2
Platform:
GPL11154
Series:
GSE47677 GSE47678
Download data: BED, BEDGRAPH
Sample
Accession:
GSM1154510
ID:
301154510

SRA Run Selector

20.

HCT116_6hr_TSA_GA3816_RNAseq

Organism:
Homo sapiens
Source name:
HCT116 cells treated with trichostatin-A (TSA) for 6 hours
Platform:
GPL11154
Series:
GSE47488 GSE47678
Download data: BED
Sample
Accession:
GSM1151059
ID:
301151059

SRA Run Selector

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