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Items: 15

1.

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(Submitter supplied) We describe an assay for transposase-accessible chromatin using sequencing (ATAC-seq), based on direct in vitro transposition of sequencing adaptors into native chromatin, as a rapid and sensitive method for integrative epigenomic analysis. ATAC-seq captures open chromatin sites using a simple two-step protocol with 500–50,000 cells and reveals the interplay between genomic locations of open chromatin, DNA-binding proteins, individual nucleosomes and chromatin compaction at nucleotide resolution. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL11154
13 Samples
Download data: BED
Series
Accession:
GSE47753
ID:
200047753

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2000 (Homo sapiens)

Organism:
Homo sapiens
10400 Series
180082 Samples
Download data
Platform
Accession:
GPL11154
ID:
100011154

3.

CD4+_ATACseq_Day3_Rep2

Organism:
Homo sapiens
Source name:
CD4+ T cells, day 3
Platform:
GPL11154
Series:
GSE47753
Download data
Sample
Accession:
GSM1155969
ID:
301155969

SRA Run Selector

4.

CD4+_ATACseq_Day3_Rep1

Organism:
Homo sapiens
Source name:
CD4+ T cells, day 3
Platform:
GPL11154
Series:
GSE47753
Download data
Sample
Accession:
GSM1155968
ID:
301155968

SRA Run Selector

5.

CD4+_ATACseq_Day2_Rep2

Organism:
Homo sapiens
Source name:
CD4+ T cells, day 2
Platform:
GPL11154
Series:
GSE47753
Download data
Sample
Accession:
GSM1155967
ID:
301155967

SRA Run Selector

6.

CD4+_ATACseq_Day2_Rep1

Organism:
Homo sapiens
Source name:
CD4+ T cells, day 2
Platform:
GPL11154
Series:
GSE47753
Download data
Sample
Accession:
GSM1155966
ID:
301155966

SRA Run Selector

7.

CD4+_ATACseq_Day1_Rep2

Organism:
Homo sapiens
Source name:
CD4+ T cells, day 1
Platform:
GPL11154
Series:
GSE47753
Download data
Sample
Accession:
GSM1155965
ID:
301155965

SRA Run Selector

8.

CD4+_ATACseq_Day1_Rep1

Organism:
Homo sapiens
Source name:
CD4+ T cells, day 1
Platform:
GPL11154
Series:
GSE47753
Download data
Sample
Accession:
GSM1155964
ID:
301155964

SRA Run Selector

9.

GM12878_ATACseq_500_Rep3

Organism:
Homo sapiens
Source name:
GM12878, 500 cells
Platform:
GPL11154
Series:
GSE47753
Download data
Sample
Accession:
GSM1155963
ID:
301155963

SRA Run Selector

10.

GM12878_ATACseq_500_Rep2

Organism:
Homo sapiens
Source name:
GM12878, 500 cells
Platform:
GPL11154
Series:
GSE47753
Download data
Sample
Accession:
GSM1155962
ID:
301155962

SRA Run Selector

11.

GM12878_ATACseq_500_Rep1

Organism:
Homo sapiens
Source name:
GM12878, 500 cells
Platform:
GPL11154
Series:
GSE47753
Download data
Sample
Accession:
GSM1155961
ID:
301155961

SRA Run Selector

12.

GM12878_ATACseq_50k_Rep4

Organism:
Homo sapiens
Source name:
GM12878, 50k cells
Platform:
GPL11154
Series:
GSE47753
Download data
Sample
Accession:
GSM1155960
ID:
301155960

SRA Run Selector

13.

GM12878_ATACseq_50k_Rep3

Organism:
Homo sapiens
Source name:
GM12878, 50k cells
Platform:
GPL11154
Series:
GSE47753
Download data
Sample
Accession:
GSM1155959
ID:
301155959

SRA Run Selector

14.

GM12878_ATACseq_50k_Rep2

Organism:
Homo sapiens
Source name:
GM12878, 50k cells
Platform:
GPL11154
Series:
GSE47753
Download data
Sample
Accession:
GSM1155958
ID:
301155958

SRA Run Selector

15.

GM12878_ATACseq_50k_Rep1

Organism:
Homo sapiens
Source name:
GM12878, 50k cells
Platform:
GPL11154
Series:
GSE47753
Download data
Sample
Accession:
GSM1155957
ID:
301155957

SRA Run Selector

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