GSE47933[Accession] - GEO DataSets - NCBI

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Items: 19

Select item 2000479331.

Impact of library preparation on downstream analysis and interpretation of RNA-seq data: comparison between Illumina PolyA and NuGEN Ovation protocol

(Submitter supplied) Objectives: The sequencing by the PolyA selection is the most common approach for library preparation. With limited amount or degraded RNA, alternative protocols such as the NuGEN have been developed. However, it is not yet clear how the different library preparations affect the downstream analyses of the broad applications of RNA sequencing. Methods and Materials: Eight human mammary epithelial cell (HMEC) lines with high quality RNA were sequenced by Illumina’s mRNA-Seq PolyA selection and NuGEN ENCORE library preparation. more...

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL11154 GPL10999
16 Samples

Download data: TXT

Series

Accession:: GSE47933

ID:: 200047933

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 1000111542.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10400 Series
180082 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 1000109993.

Illumina Genome Analyzer IIx (Homo sapiens)

Organism:: Homo sapiens

1096 Series
9927 Samples

Platform

Accession:: GPL10999

ID:: 100010999

Select item 3011627244.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL10999
Series:: GSE47933

Sample

Accession:: GSM1162724

ID:: 301162724

SRA Run Selector

Select item 3011627235.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL10999
Series:: GSE47933

Sample

Accession:: GSM1162723

ID:: 301162723

SRA Run Selector

Select item 3011627226.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL10999
Series:: GSE47933

Sample

Accession:: GSM1162722

ID:: 301162722

SRA Run Selector

Select item 3011627217.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL10999
Series:: GSE47933

Sample

Accession:: GSM1162721

ID:: 301162721

SRA Run Selector

Select item 3011627208.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL10999
Series:: GSE47933

Sample

Accession:: GSM1162720

ID:: 301162720

SRA Run Selector

Select item 3011627199.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL10999
Series:: GSE47933

Sample

Accession:: GSM1162719

ID:: 301162719

SRA Run Selector

Select item 30116271810.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL10999
Series:: GSE47933

Sample

Accession:: GSM1162718

ID:: 301162718

SRA Run Selector

Select item 30116271711.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL10999
Series:: GSE47933

Sample

Accession:: GSM1162717

ID:: 301162717

SRA Run Selector

Select item 30116273212.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL11154
Series:: GSE47933

Sample

Accession:: GSM1162732

ID:: 301162732

SRA Run Selector

Select item 30116273113.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL11154
Series:: GSE47933

Sample

Accession:: GSM1162731

ID:: 301162731

SRA Run Selector

Select item 30116273014.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL11154
Series:: GSE47933

Sample

Accession:: GSM1162730

ID:: 301162730

SRA Run Selector

Select item 30116272915.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL11154
Series:: GSE47933

Sample

Accession:: GSM1162729

ID:: 301162729

SRA Run Selector

Select item 30116272816.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL11154
Series:: GSE47933

Sample

Accession:: GSM1162728

ID:: 301162728

SRA Run Selector

Select item 30116272717.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL11154
Series:: GSE47933

Sample

Accession:: GSM1162727

ID:: 301162727

SRA Run Selector

Select item 30116272618.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL11154
Series:: GSE47933

Sample

Accession:: GSM1162726

ID:: 301162726

SRA Run Selector

Select item 30116272519.

Organism:: Homo sapiens

Source name:: human mammary epithelial cell

Platform:: GPL11154
Series:: GSE47933

Sample

Accession:: GSM1162725

ID:: 301162725

SRA Run Selector

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