GSE52529[Accession] - GEO DataSets - NCBI

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Select item 2000525291.

Pseudo-temporal ordering of individual cells reveals regulators of differentiation

(Submitter supplied) Single-cell expression profiling by RNA-Seq promises to exploit cell-to-cell variation in gene expression to reveal regulatory circuitry governing cell differentiation and other biological processes. Here, we describe Monocle, a novel unsupervised algorithm for ordering cells by progress through differentiation that dramatically increases temporal resolution of expression measurements. This reordering unmasks switch-like changes in expression of key regulatory factors, reveals sequentially organized waves of gene regulation, and exposes regulators of cell differentiation. more...

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL11154 GPL16791
384 Samples

Download data: TXT

Series

Accession:: GSE52529

ID:: 200052529

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000167912.

Illumina HiSeq 2500 (Homo sapiens)

Organism:: Homo sapiens

11813 Series
336528 Samples

Platform

Accession:: GPL16791

ID:: 100016791

Select item 1000111543.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10403 Series
180361 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 3012693434.

Bulk RNA-Seq, 72 hrs, replicate 3

Organism:: Homo sapiens

Source name:: Bulk RNA-Seq_72 hrs

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269343

ID:: 301269343

SRA Run Selector

Select item 3012693425.

Bulk RNA-Seq, 72 hrs, replicate 2

Organism:: Homo sapiens

Source name:: Bulk RNA-Seq_72 hrs

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269342

ID:: 301269342

SRA Run Selector

Select item 3012693416.

Bulk RNA-Seq, 72 hrs, replicate 1

Organism:: Homo sapiens

Source name:: Bulk RNA-Seq_72 hrs

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269341

ID:: 301269341

SRA Run Selector

Select item 3012693407.

Bulk RNA-Seq, 48 hrs, replicate 3

Organism:: Homo sapiens

Source name:: Bulk RNA-Seq_48 hrs

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269340

ID:: 301269340

SRA Run Selector

Select item 3012693398.

Bulk RNA-Seq, 48 hrs, replicate 2

Organism:: Homo sapiens

Source name:: Bulk RNA-Seq_48 hrs

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269339

ID:: 301269339

SRA Run Selector

Select item 3012693389.

Bulk RNA-Seq, 48 hrs, replicate 1

Organism:: Homo sapiens

Source name:: Bulk RNA-Seq_48 hrs

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269338

ID:: 301269338

SRA Run Selector

Select item 30126933710.

Bulk RNA-Seq, 24 hrs, replicate 3

Organism:: Homo sapiens

Source name:: Bulk RNA-Seq_24 hrs

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269337

ID:: 301269337

SRA Run Selector

Select item 30126933611.

Bulk RNA-Seq, 24 hrs, replicate 2

Organism:: Homo sapiens

Source name:: Bulk RNA-Seq_24 hrs

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269336

ID:: 301269336

SRA Run Selector

Select item 30126933512.

Bulk RNA-Seq, 24 hrs, replicate 1

Organism:: Homo sapiens

Source name:: Bulk RNA-Seq_24 hrs

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269335

ID:: 301269335

SRA Run Selector

Select item 30126933413.

Bulk RNA-Seq, 0 hrs, replicate 3

Organism:: Homo sapiens

Source name:: Bulk RNA-Seq_0 hrs

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269334

ID:: 301269334

SRA Run Selector

Select item 30126933314.

Bulk RNA-Seq, 0 hrs, replicate 2

Organism:: Homo sapiens

Source name:: Bulk RNA-Seq_0 hrs

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269333

ID:: 301269333

SRA Run Selector

Select item 30126933215.

Bulk RNA-Seq, 0 hrs, replicate 1

Organism:: Homo sapiens

Source name:: Bulk RNA-Seq_0 hrs

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269332

ID:: 301269332

SRA Run Selector

Select item 30126924716.

Cell T48_CT_H12

Organism:: Homo sapiens

Source name:: Myoblast_Cell T48_CT_H

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269247

ID:: 301269247

SRA Run Selector

Select item 30126924617.

Cell T48_CT_H11

Organism:: Homo sapiens

Source name:: Myoblast_Cell T48_CT_H

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269246

ID:: 301269246

SRA Run Selector

Select item 30126924518.

Cell T48_CT_H10

Organism:: Homo sapiens

Source name:: Myoblast_Cell T48_CT_H

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269245

ID:: 301269245

SRA Run Selector

Select item 30126924419.

Cell T48_CT_H09

Organism:: Homo sapiens

Source name:: Myoblast_Cell T48_CT_H

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269244

ID:: 301269244

SRA Run Selector

Select item 30126924320.

Cell T48_CT_H08

Organism:: Homo sapiens

Source name:: Myoblast_Cell T48_CT_H

Platform:: GPL16791
Series:: GSE52529

Sample

Accession:: GSM1269243

ID:: 301269243

SRA Run Selector

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