GSE53386[Accession] - GEO DataSets - NCBI

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Select item 2000533861.

Single-cell RNA-Seq transcriptome analysis of circular RNAs in mouse embryos

(Submitter supplied) We reported a new method of single-cell universal poly(A)-independent RNA sequencing (SUPeR-seq) to obtain single cell whole transcriptome analysis that covers both poly(A) plus and poly(A) minus RNA species. We built libraries of single mouse ESC , 10pg, 100pg and 1ng diluted mouse ES total RNA, single HEK293T cell and mouse early embryos before 4-cell stage. We analyzed these data using bioinformatics and find a good coverage of non-polyadenylated RNAs, circular RNA for example. more...

Organism:: Homo sapiens; Mus musculus

Type:: Expression profiling by high throughput sequencing

4 related Platforms
118 Samples

Download data: TXT

Series

Accession:: GSE53386

ID:: 200053386

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000170212.

Illumina HiSeq 2500 (Mus musculus)

Organism:: Mus musculus

10746 Series
292846 Samples

Platform

Accession:: GPL17021

ID:: 100017021

Select item 1000167913.

Illumina HiSeq 2500 (Homo sapiens)

Organism:: Homo sapiens

11814 Series
336528 Samples

Platform

Accession:: GPL16791

ID:: 100016791

Select item 1000131124.

Illumina HiSeq 2000 (Mus musculus)

Organism:: Mus musculus

8232 Series
187296 Samples

Platform

Accession:: GPL13112

ID:: 100013112

Select item 1000111545.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10406 Series
180377 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 3014964416.

SUPeR-seq_zygote5

Organism:: Mus musculus

Source name:: mouse zygote

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496441

ID:: 301496441

SRA Run Selector

Select item 3014964407.

SUPeR-seq_zygote4

Organism:: Mus musculus

Source name:: mouse zygote

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496440

ID:: 301496440

SRA Run Selector

Select item 3014964398.

SUPeR-seq_zygote3

Organism:: Mus musculus

Source name:: mouse zygote

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496439

ID:: 301496439

SRA Run Selector

Select item 3014964389.

Organism:: Mus musculus

Source name:: mouse blastocyst

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496438

ID:: 301496438

SRA Run Selector

Select item 30149643710.

Organism:: Mus musculus

Source name:: mouse blastocyst

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496437

ID:: 301496437

SRA Run Selector

Select item 30149643611.

Organism:: Mus musculus

Source name:: mouse blastocyst

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496436

ID:: 301496436

SRA Run Selector

Select item 30149643512.

SUPeR-seq_morula3

Organism:: Mus musculus

Source name:: mouse morula

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496435

ID:: 301496435

SRA Run Selector

Select item 30149643413.

SUPeR-seq_morula2

Organism:: Mus musculus

Source name:: mouse morula

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496434

ID:: 301496434

SRA Run Selector

Select item 30149643314.

SUPeR-seq_morula1

Organism:: Mus musculus

Source name:: mouse morula

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496433

ID:: 301496433

SRA Run Selector

Select item 30149643215.

Organism:: Mus musculus

Source name:: mouse blastocyst

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496432

ID:: 301496432

SRA Run Selector

Select item 30149643116.

Organism:: Mus musculus

Source name:: mouse blastocyst

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496431

ID:: 301496431

SRA Run Selector

Select item 30149643017.

Organism:: Mus musculus

Source name:: mouse blastocyst

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496430

ID:: 301496430

SRA Run Selector

Select item 30149642918.

SUPeR-seq_blastocyst3

Organism:: Mus musculus

Source name:: mouse blastocyst

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496429

ID:: 301496429

SRA Run Selector

Select item 30149642819.

SUPeR-seq_blastocyst2

Organism:: Mus musculus

Source name:: mouse blastocyst

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496428

ID:: 301496428

SRA Run Selector

Select item 30149642720.

SUPeR-seq_blastocyst1

Organism:: Mus musculus

Source name:: mouse blastocyst

Platform:: GPL13112
Series:: GSE53386

Download data: TXT

Sample

Accession:: GSM1496427

ID:: 301496427

SRA Run Selector

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