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Items: 1 to 20 of 26

1.

A global regulatory mechanism for activating an exon network required for neurogenesis

(Submitter supplied) The vertebrate and neural-specific SR-related protein nSR100/SRRM4 regulates an extensive program of alternative splicing with critical roles in nervous system development. However, the mechanism by which nSR100 controls its target exons is poorly understood. We demonstrate that nSR100-dependent neural exons are associated with a unique configuration of intronic cis-elements that promote rapid switch-like regulation during neurogenesis. more...
Organism:
Homo sapiens; Mus musculus
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL16791 GPL11154 GPL17021
22 Samples
Download data: BEDGRAPH, TXT
Series
Accession:
GSE57278
ID:
200057278
2.

Illumina HiSeq 2500 (Mus musculus)

Platform
Accession:
GPL17021
ID:
100017021
3.

Illumina HiSeq 2500 (Homo sapiens)

Platform
Accession:
GPL16791
ID:
100016791
4.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
5.

nSR100-PAR-iCLIP-mm_rep2

Organism:
Mus musculus
Source name:
N2A, dox-inducible
Platform:
GPL17021
Series:
GSE57278
Download data: BEDGRAPH
Sample
Accession:
GSM1486176
ID:
301486176
6.

nSR100-PAR-iCLIP-mm_rep1

Organism:
Mus musculus
Source name:
N2A, dox-inducible
Platform:
GPL17021
Series:
GSE57278
Download data: BEDGRAPH
Sample
Accession:
GSM1486175
ID:
301486175
7.

nSR100-iCLIP-mm

Organism:
Mus musculus
Source name:
N2A, dox-inducible
Platform:
GPL17021
Series:
GSE57278
Download data: BEDGRAPH
Sample
Accession:
GSM1486174
ID:
301486174
8.

U2af65-PAR-iCLIP_nSR100-KD

Organism:
Mus musculus
Source name:
N2A, nSR100 depleted
Platform:
GPL17021
Series:
GSE57278
Download data: BEDGRAPH
Sample
Accession:
GSM1378379
ID:
301378379
9.

U2af65-PAR-iCLIP_Ctrl-KD

Organism:
Mus musculus
Source name:
N2A, control
Platform:
GPL17021
Series:
GSE57278
Download data: BEDGRAPH
Sample
Accession:
GSM1378378
ID:
301378378
10.

N2A_siPtbp1_KD_b

Organism:
Mus musculus
Source name:
N2A, Ptbp1 depleted
Platform:
GPL17021
Series:
GSE57278
Download data: TXT
Sample
Accession:
GSM1378371
ID:
301378371
11.

N2A_siCtrl_KD_b

Organism:
Mus musculus
Source name:
N2A, control
Platform:
GPL17021
Series:
GSE57278
Download data: TXT
Sample
Accession:
GSM1378370
ID:
301378370
12.

N2A_siU2af65_KD_a

Organism:
Mus musculus
Source name:
N2A, U2af65 depleted
Platform:
GPL17021
Series:
GSE57278
Download data: TXT
Sample
Accession:
GSM1378369
ID:
301378369
13.

N2A_siCtrl_KD_a

Organism:
Mus musculus
Source name:
N2A, control
Platform:
GPL17021
Series:
GSE57278
Download data: TXT
Sample
Accession:
GSM1378368
ID:
301378368
14.

N2A_nSR100_KDshL4-2

Organism:
Mus musculus
Source name:
N2A, nSR100 depleted
Platform:
GPL17021
Series:
GSE57278
Download data
Sample
Accession:
GSM1378367
ID:
301378367
15.

N2A_Ctrl_KDshGFP-2

Organism:
Mus musculus
Source name:
N2A, control
Platform:
GPL17021
Series:
GSE57278
Download data
Sample
Accession:
GSM1378366
ID:
301378366
16.

N2A_nSR100_KDshL4-1

Organism:
Mus musculus
Source name:
N2A, nSR100 depleted
Platform:
GPL17021
Series:
GSE57278
Download data
Sample
Accession:
GSM1378365
ID:
301378365
17.

N2A_Ctrl_KDshGFP-1

Organism:
Mus musculus
Source name:
N2A, control
Platform:
GPL17021
Series:
GSE57278
Download data
Sample
Accession:
GSM1378364
ID:
301378364
18.

nSR100-iCLIP-hs

Organism:
Homo sapiens
Source name:
293T, dox-inducible
Platform:
GPL16791
Series:
GSE57278
Download data: BEDGRAPH
Sample
Accession:
GSM1486179
ID:
301486179
19.

PTBP1-iCLIP_ plus nSR100

Organism:
Homo sapiens
Source name:
293T, dox-inducible
Platform:
GPL16791
Series:
GSE57278
Download data: BEDGRAPH
Sample
Accession:
GSM1486178
ID:
301486178
20.

PTBP1-iCLIP_no nSR100

Organism:
Homo sapiens
Source name:
293T, dox-inducible
Platform:
GPL16791
Series:
GSE57278
Download data: BEDGRAPH
Sample
Accession:
GSM1486177
ID:
301486177
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Supplemental Content

db=gds|term=GSE57278[Accession]|query=1|qty=3|blobid=MCID_6670015ece9c6e4cac1e65d1|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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