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Items: 1 to 20 of 26

1.

Multiplexing of ChIP-seq samples for a model experimental condition has minimal impact on peak detection

(Submitter supplied) ChIP-seq experiments are standard experimental procedure for interrogating epigenetic states and protein-DNA interactions. Sequencing experiments are often designed according to the trade-off between the need to obtain maximum sequencing coverage limited funds. Multiplexing samples is a common approach to minimize cost and maximize information yield. We therefore performed an extensive ChiP-seq multiplexing study to gain a better understanding of the effect of multiplexing on the resulting peak detection and genomic annotation and to provide solid guidelines for multiplexing ChIP-seq studies. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL16791
24 Samples
Download data
Series
Accession:
GSE64504
ID:
200064504
2.

Illumina HiSeq 2500 (Homo sapiens)

Platform
Accession:
GPL16791
ID:
100016791
3.

Sample_H3K4me3_Index_7_lane6

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly24
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572789
ID:
301572789
4.

Sample_H3K4me3_Index_6_lane6

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly23
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572788
ID:
301572788
5.

Sample_H3K4me3_Index_5_lane6

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly22
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572787
ID:
301572787
6.

Sample_H3K4me3_Index_4_lane6

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly21
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572786
ID:
301572786
7.

Sample_H3K4me3_Index_3_lane6

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly20
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572785
ID:
301572785
8.

Sample_H3K4me3_Index_2_lane6

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly19
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572784
ID:
301572784
9.

Sample_H3K4me3_Index_1_lane6

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly18
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572783
ID:
301572783
10.

Sample_Input_Index_12_lane6

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly17
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572782
ID:
301572782
11.

Sample_H3K4me3_Index_12_lane5

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly16
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572781
ID:
301572781
12.

Sample_H3K4me3_Index_7_lane5

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly15
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572780
ID:
301572780
13.

Sample_H3K4me3_Index_5_lane5

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly14
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572779
ID:
301572779
14.

Sample_H3K4me3_Index_4_lane5

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly13
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572778
ID:
301572778
15.

Sample_H3K4me3_Index_2_lane5

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly12
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572777
ID:
301572777
16.

Sample_Input_Index_6_lane5

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly11
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572776
ID:
301572776
17.

Sample_H3K4me3_Index_5_lane4

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly10
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572775
ID:
301572775
18.

Sample_H3K4me3_Index_4_lane4

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly9
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572774
ID:
301572774
19.

Sample_Input_Index_12_lane4

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly8
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572773
ID:
301572773
20.

Sample_Input_Index_6_lane4

Organism:
Homo sapiens
Source name:
Diffuse large B-cell lymphoma (DLBCL) cell line OCI-Ly7
Platform:
GPL16791
Series:
GSE64504
Download data
Sample
Accession:
GSM1572772
ID:
301572772
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Supplemental Content

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